Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21104	5630401J11Rik	RIKEN cDNA 5630401J11 gene	17		106489
Gene Ontology	integral to membrane
Human Homolog	C6orf83[chromosome 6 open reading frame 83]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCAGCCCCC (5) 21.2 0.0212 P8 Cb GC GGCCTGAGGC (6) 21.2 0.0212 P8 Cb GC TCTACACATA (5) 13.1 0.0131 P8 Cb GC GACCGCTGCA 3.3 0.0033 Cb medulloblastoma GGCCTGAGGC (6) 27.7 0.0277 Cb medulloblastoma TCTACACATA (5) 13.9 0.0139 Cb medulloblastoma GGCAGCCCCC (5) 6.9 0.0069 Cb medulloblastoma TGACCAACTG (6) 4.6 0.0046 Cb medulloblastoma CTTTCTAATG (4) 2.3 0.0023 Cb medulloblastoma GACTGCTGCA (3) 2.3 0.0023 P8 GC+1d culture GGCAGCCCCC (5) 40 0.04 P8 GC+1d culture TCTACACATA (5) 9.1 0.0091 P8 GC+1d culture GGCCTGAGGC (6) 5.7 0.0057 P8 GC+1d culture CTTTCTAATG (4) 1.1 0.0011 P8 GC+1d culture CTTTTTAATG (4) 1.1 0.0011 P8 GC+1d culture GACCGCTGCA 1.1 0.0011 P8 GC+SHH+1d culture GGCAGCCCCC (5) 38.6 0.0386 P8 GC+SHH+1d culture GGCCTGAGGC (6) 14.1 0.0141 P8 GC+SHH+1d culture TCTACACATA (5) 8.2 0.0082 P8 GC+SHH+1d culture CTTTCTAATG (4) 1.2 0.0012 P8 GC+SHH+1d culture TGACCAACTG (6) 1.2 0.0012 3T3 fibroblasts GGCAGCCCCC (5) 105.1 0.1051 3T3 fibroblasts GGCCTGAGGC (6) 24.5 0.0245 3T3 fibroblasts GACTGCTGCA (3) 3.5 0.0035 E15 cortex GGCAGCCCCC (5) 54.4 0.0544 E15 cortex GGCCTGAGGC (6) 14.8 0.0148 E15 cortex GACTGCTGCA (3) 4.9 0.0049 P1 cortex GGCAGCCCCC (5) 18.2 0.0182 P1 cortex TCTACACATA (5) 13.6 0.0136 P1 cortex GACCGCTGCA 4.5 0.0045 Hypothalamus GGCCTGAGGC (6) 23.5 0.0235 Hypothalamus TCTACACATA (5) 18.1 0.0181 Hypothalamus GACCGCTGCA 3.6 0.0036 Hypothalamus TGACCAACTG (6) 3.6 0.0036 E12.5 retina GGCCTGAGGC (6) 26.3 0.0263 E12.5 retina GGCAGCCCCC (5) 20.7 0.0207 E12.5 retina TCTACACATA (5) 3.8 0.0038 E14.5 retina GGCCTGAGGC (6) 21.9 0.0219 E14.5 retina GGCAGCCCCC (5) 7.3 0.0073 E14.5 retina TCTACACATA (5) 1.8 0.0018 E16.5 retina GGCCTGAGGC (6) 27.2 0.0272 E16.5 retina GGCAGCCCCC (5) 9.1 0.0091 E16.5 retina CTTTCTAATG (4) 1.8 0.0018 E16.5 retina TCTACACATA (5) 1.8 0.0018 E18.5 retina GGCAGCCCCC (5) 27.3 0.0273 E18.5 retina GGCCTGAGGC (6) 14.6 0.0146 E18.5 retina TCTACACATA (5) 1.8 0.0018 P0.5 retina GGCAGCCCCC (5) 21.6 0.0216 P0.5 retina GGCCTGAGGC (6) 17.7 0.0177 P0.5 retina TCTACACATA (5) 3.9 0.0039 P0.5 retina GACCGCTGCA 2 0.002 P0.5 retina TGACCAACTG (6) 2 0.002 P2.5 retina GGCAGCCCCC (5) 26.4 0.0264 P2.5 retina GGCCTGAGGC (6) 26.4 0.0264 P2.5 retina CTTTCTAATG (4) 5.3 0.0053 P2.5 retina GACCGCTGCA 5.3 0.0053 P2.5 retina TCTACACATA (5) 5.3 0.0053 P2.5 retina GACTGCTGCA (3) 1.8 0.0018 P2.5 retina TGACCAACTG (6) 1.8 0.0018 P4.5 retina GGCCTGAGGC (6) 27.7 0.0277 P4.5 retina GGCAGCCCCC (5) 15.9 0.0159 P4.5 retina TCTACACATA (5) 7.9 0.0079 P4.5 retina TGACCAACTG (6) 7.9 0.0079 P4.5 retina GACCGCTGCA 2 0.002 P6.5 retina GGCCTGAGGC (6) 43.4 0.0434 P6.5 retina GGCAGCCCCC (5) 16.7 0.0167 P6.5 retina TCTACACATA (5) 6.7 0.0067 P6.5 retina GACCGCTGCA 1.7 0.0017 P10.5 crx- retina GGCAGCCCCC (5) 24.2 0.0242 P10.5 crx- retina GGCCTGAGGC (6) 18.6 0.0186 P10.5 crx- retina TCTACACATA (5) 13 0.013 P10.5 crx- retina CTTTCTAATG (4) 1.9 0.0019 P10.5 crx- retina GACCGCTGCA 1.9 0.0019 P10.5 crx+ retina GGCCTGAGGC (6) 17.3 0.0173 P10.5 crx+ retina GGCAGCCCCC (5) 15.4 0.0154 P10.5 crx+ retina CTTTCTAATG (4) 1.9 0.0019 P10.5 crx+ retina TCTACACATA (5) 1.9 0.0019 Adult retinal GGCCTGAGGC (6) 11.1 0.0111 Adult retinal GGCAGCCCCC (5) 7.4 0.0074 Adult retinal TCTACACATA (5) 7.4 0.0074 Adult retinal CTTTCTAATG (4) 1.9 0.0019 Adult retinal CTTTTTAATG (4) 1.9 0.0019 Adult retinal TGACCAACTG (6) 1.9 0.0019 ONL GGCAGCCCCC (5) 9.6 0.0096 ONL GGCCTGAGGC (6) 7.7 0.0077 ONL TCTACACATA (5) 3.8 0.0038 ONL CTTTCTAATG (4) 1.9 0.0019 ONL GACCGCTGCA 1.9 0.0019