Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.21444
Ssna1
Sjogren's syndrome nuclear autoantigen 1
2
68475
Gene Ontology
nucleus
Human Homolog
SSNA1[Sjogren's syndrome nuclear autoantigen 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 57 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCCTCTGGTG
(
11
)
24.5
0.0245
P8 Cb GC
GCCTTTGGTG
(
9
)
1.6
0.0016
Cb medulloblastoma
GCCTCTGGTG
(
11
)
16.2
0.0162
Cb medulloblastoma
AGGGGCTCTC
(
3
)
2.3
0.0023
P8 GC+1d culture
GCCTCTGGTG
(
11
)
22.8
0.0228
P8 GC+1d culture
AGGGGCTCTC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GCCTCTGGTG
(
11
)
26.9
0.0269
P8 GC+SHH+1d culture
AGGGGCTCTC
(
3
)
2.3
0.0023
3T3 fibroblasts
GCCTCTGGTG
(
11
)
31.5
0.0315
3T3 fibroblasts
GAGCTGCTCA (
9
)
7
0.007
3T3 fibroblasts
TGCTGTGGGG (
5
)
3.5
0.0035
E15 cortex
AGGGGCTCTC
(
3
)
4.9
0.0049
E15 cortex
GAGCTGCTCA (
9
)
4.9
0.0049
P1 cortex
CCTCTGGTGT (
3
)
9.1
0.0091
P1 cortex
AGGGGCTCTC
(
3
)
4.5
0.0045
P1 cortex
GCCTCTGGTG
(
11
)
4.5
0.0045
P1 cortex
TTTGGAAAAA (
5
)
4.5
0.0045
Hypothalamus
GCCTCTGGTG
(
11
)
16.3
0.0163
Hypothalamus
AGGGGCTCTC
(
3
)
3.6
0.0036
Hypothalamus
GAGCTGCTCA (
9
)
3.6
0.0036
E12.5 retina
GCCTCTGGTG
(
11
)
56.3
0.0563
E14.5 retina
GCCTCTGGTG
(
11
)
23.7
0.0237
E14.5 retina
GCCTTTGGTG
(
9
)
1.8
0.0018
E16.5 retina
GCCTCTGGTG
(
11
)
39.8
0.0398
E16.5 retina
TTGAAAGAAA (
3
)
1.8
0.0018
E18.5 retina
GCCTCTGGTG
(
11
)
52.8
0.0528
E18.5 retina
TTTGGAAAAA (
5
)
1.8
0.0018
P0.5 retina
GCCTCTGGTG
(
11
)
45.1
0.0451
P0.5 retina
CAGGGGACCT (
3
)
2
0.002
P0.5 retina
GCCTTTGGTG
(
9
)
2
0.002
P2.5 retina
GCCTCTGGTG
(
11
)
45.8
0.0458
P2.5 retina
GCCTTTGGTG
(
9
)
1.8
0.0018
P4.5 retina
GCCTCTGGTG
(
11
)
31.7
0.0317
P4.5 retina
TCTGCTCTAA
(
2
)
2
0.002
P4.5 retina
TGCTGTGGGG (
5
)
2
0.002
P4.5 retina
TTTGGAAAAA (
5
)
2
0.002
P6.5 retina
GCCTCTGGTG
(
11
)
26.7
0.0267
P6.5 retina
AGGGGCTCTC
(
3
)
1.7
0.0017
P6.5 retina
GCCTTTGGTG
(
9
)
1.7
0.0017
P6.5 retina
TCTGCTCTAA
(
2
)
1.7
0.0017
P6.5 retina
TTGAAAGAAA (
3
)
1.7
0.0017
P10.5 crx- retina
GCCTCTGGTG
(
11
)
18.6
0.0186
P10.5 crx- retina
AGGGGCTCTC
(
3
)
3.7
0.0037
P10.5 crx- retina
CAGGGGACCT (
3
)
1.9
0.0019
P10.5 crx- retina
GAGCTGCTCA (
9
)
1.9
0.0019
P10.5 crx- retina
TCTGCTCTAA
(
2
)
1.9
0.0019
P10.5 crx- retina
TGCTGTGGGG (
5
)
1.9
0.0019
P10.5 crx+ retina
GCCTCTGGTG
(
11
)
30.8
0.0308
P10.5 crx+ retina
CCTCTGGTGT (
3
)
1.9
0.0019
Adult retinal
GCCTCTGGTG
(
11
)
24.1
0.0241
Adult retinal
TCTGCTCTAA
(
2
)
14.8
0.0148
Adult retinal
AGGGGCTCTC
(
3
)
1.9
0.0019
Adult retinal
CAGGGGACCT (
3
)
1.9
0.0019
Adult retinal
CCTCTGGTGT (
3
)
1.9
0.0019
ONL
GCCTCTGGTG
(
11
)
13.4
0.0134
ONL
CCTCTGGTGT (
3
)
1.9
0.0019
ONL
TTGAAAGAAA (
3
)
1.9
0.0019
