Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21482	D2Ertd554e	DNA segment, Chr 2, ERATO Doi 554, expressed	2	2 84.0 cM	51903
Mm.21482	Clns1a	chloride channel, nucleotide-sensitive, 1A	7	7 50.0 cM	12729
Gene Ontology	chloride transport | nucleus | regulation of cell volume
Human Homolog	CLNS1A[chloride channel, nucleotide-sensitive, 1A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TACCATCAGC (3) 8.2 0.0082 P8 Cb GC TACCATCAAC (5) 1.6 0.0016 Cb medulloblastoma TACCATCAGC (3) 6.9 0.0069 Cb medulloblastoma GGGAGGGGGG (14) 2.3 0.0023 P8 GC+1d culture TACCATCAGC (3) 9.1 0.0091 P8 GC+1d culture AAGAACAACT (5) 2.3 0.0023 P8 GC+1d culture GGGAGGGGGG (14) 1.1 0.0011 P8 GC+1d culture TACCATCAAC (5) 1.1 0.0011 P8 GC+1d culture TGCACACGTG (6) 1.1 0.0011 P8 GC+SHH+1d culture TACCATCAGC (3) 4.7 0.0047 P8 GC+SHH+1d culture AAGAACAACT (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGGTGGAAA (11) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGGGGGG (14) 1.2 0.0012 P8 GC+SHH+1d culture GTTTCTCTGT (11) 1.2 0.0012 3T3 fibroblasts GTTTCTCTGT (11) 3.5 0.0035 3T3 fibroblasts TACCATCAAC (5) 3.5 0.0035 P1 cortex GGGAGGGGGG (14) 4.5 0.0045 P1 cortex TACCATCAAC (5) 4.5 0.0045 P1 cortex TACCATCAGC (3) 4.5 0.0045 P1 cortex TGCACACGTG (6) 4.5 0.0045 Hypothalamus TACCATCAGC (3) 7.2 0.0072 Hypothalamus GAGGTGGAAA (11) 3.6 0.0036 Hypothalamus GGGAGGGGGG (14) 1.8 0.0018 E12.5 retina TACCATCAGC (3) 13.1 0.0131 E12.5 retina GAGGTGGAAA (11) 3.8 0.0038 E12.5 retina TACCATCAAC (5) 3.8 0.0038 E12.5 retina GGGAGGGGGG (14) 1.9 0.0019 E12.5 retina GTTTCTCTGT (11) 1.9 0.0019 E14.5 retina TACCATCAGC (3) 9.1 0.0091 E14.5 retina CCTCTGTGGA (4) 1.8 0.0018 E14.5 retina GAGGTGGAAA (11) 1.8 0.0018 E14.5 retina GTTTCTCTGT (11) 1.8 0.0018 E16.5 retina TACCATCAGC (3) 9.1 0.0091 E16.5 retina CCTCTGTGGA (4) 3.6 0.0036 E16.5 retina GAGGTGGAAA (11) 3.6 0.0036 E16.5 retina GTTTCTCTGT (11) 3.6 0.0036 E16.5 retina TACCATCAAC (5) 3.6 0.0036 E16.5 retina TGCACACGTG (6) 1.8 0.0018 E18.5 retina TACCATCAGC (3) 7.3 0.0073 E18.5 retina TACCATCAAC (5) 5.5 0.0055 E18.5 retina GTTTCTCTGT (11) 3.6 0.0036 E18.5 retina GAGGTGGAAA (11) 1.8 0.0018 P0.5 retina TACCATCAGC (3) 5.9 0.0059 P0.5 retina GGGAGGGGGG (14) 3.9 0.0039 P0.5 retina TACCATCAAC (5) 3.9 0.0039 P0.5 retina GAGGTGGAAA (11) 2 0.002 P0.5 retina GTTTCTCTGT (11) 2 0.002 P2.5 retina TACCATCAGC (3) 10.6 0.0106 P2.5 retina GAGGTGGAAA (11) 8.8 0.0088 P2.5 retina GTTTCTCTGT (11) 1.8 0.0018 P2.5 retina TACCATCAAC (5) 1.8 0.0018 P4.5 retina TACCATCAGC (3) 7.9 0.0079 P4.5 retina GAGGTGGAAA (11) 5.9 0.0059 P4.5 retina GTTTCTCTGT (11) 2 0.002 P6.5 retina TACCATCAGC (3) 8.3 0.0083 P6.5 retina AAGAACAACT (5) 1.7 0.0017 P6.5 retina GAGGTGGAAA (11) 1.7 0.0017 P6.5 retina TACCATCAAC (5) 1.7 0.0017 P10.5 crx- retina TACCATCAGC (3) 13 0.013 P10.5 crx- retina GAGGTGGAAA (11) 3.7 0.0037 P10.5 crx+ retina TACCATCAGC (3) 13.5 0.0135 P10.5 crx+ retina TGCACACGTG (6) 3.8 0.0038 P10.5 crx+ retina GTTTCTCTGT (11) 1.9 0.0019 Adult retinal TACCATCAGC (3) 5.6 0.0056 Adult retinal GTTTCTCTGT (11) 1.9 0.0019 Adult retinal TGCACACGTG (6) 1.9 0.0019 ONL GTTTCTCTGT (11) 3.8 0.0038 ONL TACCATCAGC (3) 1.9 0.0019 ONL TGCACACGTG (6) 1.9 0.0019