Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.214973	Safb2	scaffold attachment factor B2	17		224902
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | RNA binding
Human Homolog	SAFB2[scaffold attachment factor B2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGCACCCT (3) 9.8 0.0098 P8 Cb GC GCCAGCCAGG (10) 3.3 0.0033 P8 Cb GC GCTTCAGCCA (2) 3.3 0.0033 P8 Cb GC GGGGACTGAA 3.3 0.0033 P8 Cb GC CTGTGGATGA (6) 1.6 0.0016 P8 Cb GC GCTAAAAAAA (7) 1.6 0.0016 P8 Cb GC GGAGGCAGAG (9) 1.6 0.0016 Cb medulloblastoma GCTAAAAAAA (7) 9.2 0.0092 Cb medulloblastoma AGAACTTTCC (2) 4.6 0.0046 Cb medulloblastoma GAACCAGAAA (4) 4.6 0.0046 Cb medulloblastoma GCCAGCCAGG (10) 2.3 0.0023 Cb medulloblastoma GGAGGCAGAG (9) 2.3 0.0023 P8 GC+1d culture TGTGCACCCT (3) 11.4 0.0114 P8 GC+1d culture GCCAGCCAGG (10) 5.7 0.0057 P8 GC+1d culture CTCTGTCACT (4) 3.4 0.0034 P8 GC+1d culture AGAACTTTCC (2) 1.1 0.0011 P8 GC+1d culture CTGTGGATGA (6) 1.1 0.0011 P8 GC+1d culture GCTAAAAAAA (7) 1.1 0.0011 P8 GC+1d culture GGAGGCAGAG (9) 1.1 0.0011 P8 GC+SHH+1d culture TGTGCACCCT (3) 14.1 0.0141 P8 GC+SHH+1d culture GCCAGCCAGG (10) 3.5 0.0035 P8 GC+SHH+1d culture GGGGACTGAA 3.5 0.0035 P8 GC+SHH+1d culture GCTAAAAAAA (7) 2.3 0.0023 P8 GC+SHH+1d culture AGAACTTTCC (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGTGGATGA (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAGAGGA (4) 1.2 0.0012 3T3 fibroblasts TGTGCACCCT (3) 24.5 0.0245 3T3 fibroblasts CTCTGTCACT (4) 7 0.007 3T3 fibroblasts GCCAGCCAGG (10) 3.5 0.0035 3T3 fibroblasts GCTAAAAAAA (7) 3.5 0.0035 3T3 fibroblasts GGAGGCAGAG (9) 3.5 0.0035 E15 cortex GCCAGCCAGG (10) 19.8 0.0198 E15 cortex GCTAAAAAAA (7) 4.9 0.0049 E15 cortex GGAGGCAGAG (9) 4.9 0.0049 P1 cortex AGAACTTTCC (2) 9.1 0.0091 Hypothalamus GCTAAAAAAA (7) 9.1 0.0091 Hypothalamus GGAGGCAGAG (9) 7.2 0.0072 Hypothalamus GCCAGCCAGG (10) 5.4 0.0054 Hypothalamus AGAACTTTCC (2) 1.8 0.0018 Hypothalamus GGGAAGAGGA (4) 1.8 0.0018 E12.5 retina TGTGCACCCT (3) 7.5 0.0075 E12.5 retina GCCAGCCAGG (10) 3.8 0.0038 E12.5 retina GGAGGCAGAG (9) 3.8 0.0038 E12.5 retina AGAACTTTCC (2) 1.9 0.0019 E14.5 retina GGAGGCAGAG (9) 14.6 0.0146 E14.5 retina AGAACTTTCC (2) 1.8 0.0018 E14.5 retina CTGTGGATGA (6) 1.8 0.0018 E14.5 retina GCCAGCCAGG (10) 1.8 0.0018 E16.5 retina GCCAGCCAGG (10) 7.2 0.0072 E16.5 retina TGTGCACCCT (3) 3.6 0.0036 E16.5 retina GCTAAAAAAA (7) 1.8 0.0018 E16.5 retina GGAGGCAGAG (9) 1.8 0.0018 E18.5 retina GCCAGCCAGG (10) 5.5 0.0055 E18.5 retina GGAGGCAGAG (9) 1.8 0.0018 E18.5 retina TGTGCACCCT (3) 1.8 0.0018 P0.5 retina GCCAGCCAGG (10) 11.8 0.0118 P0.5 retina TGTGCACCCT (3) 9.8 0.0098 P0.5 retina AGAGTGGAGC (4) 5.9 0.0059 P0.5 retina AGAACTTTCC (2) 2 0.002 P0.5 retina CTGTGGATGA (6) 2 0.002 P0.5 retina GGAGGCAGAG (9) 2 0.002 P2.5 retina GCCAGCCAGG (10) 12.3 0.0123 P2.5 retina GGAGGCAGAG (9) 7 0.007 P2.5 retina TGTGCACCCT (3) 5.3 0.0053 P2.5 retina AGAACTTTCC (2) 3.5 0.0035 P4.5 retina GCCAGCCAGG (10) 5.9 0.0059 P4.5 retina GGAGGCAGAG (9) 5.9 0.0059 P4.5 retina AGAACTTTCC (2) 2 0.002 P4.5 retina GCTAAAAAAA (7) 2 0.002 P4.5 retina GCTTCAGCCA (2) 2 0.002 P4.5 retina TGTGCACCCT (3) 2 0.002 P6.5 retina GCCAGCCAGG (10) 6.7 0.0067 P6.5 retina GGAGGCAGAG (9) 5 0.005 P6.5 retina TGTGCACCCT (3) 3.3 0.0033 P6.5 retina AGAACTTTCC (2) 1.7 0.0017 P6.5 retina CTCTGTCACT (4) 1.7 0.0017 P6.5 retina CTGTGGATGA (6) 1.7 0.0017 P6.5 retina GGGAAGAGGA (4) 1.7 0.0017 P10.5 crx- retina AGAACTTTCC (2) 1.9 0.0019 P10.5 crx- retina CTCTGTCACT (4) 1.9 0.0019 P10.5 crx- retina GCCAGCCAGG (10) 1.9 0.0019 P10.5 crx+ retina GGAGGCAGAG (9) 9.6 0.0096 P10.5 crx+ retina CTCTGTCACT (4) 3.8 0.0038 P10.5 crx+ retina GCCAGCCAGG (10) 1.9 0.0019 Adult retinal TGTGCACCCT (3) 7.4 0.0074 Adult retinal GGAGGCAGAG (9) 5.6 0.0056 Adult retinal GCCAGCCAGG (10) 3.7 0.0037 ONL GGAGGCAGAG (9) 5.7 0.0057 ONL AGAACTTTCC (2) 1.9 0.0019