Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.215860	Ascc3l1	activating signal cointegrator 1 complex subunit 3-like 1	2	2 62.2 cM	320632
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity
Human Homolog	ASCC3L1[activating signal cointegrator 1 complex subunit 3-like 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCTCATA (21) 22.8 0.0228 P8 Cb GC GTTTTCTAGT (2) 17.9 0.0179 P8 Cb GC GCCAAAAAAA (23) 6.5 0.0065 P8 Cb GC TCTCTGAATG (4) 6.5 0.0065 P8 Cb GC AACTGTACAA (2) 3.3 0.0033 P8 Cb GC AAACTTGAAA (4) 1.6 0.0016 P8 Cb GC ATTTTTTTTT (36) 1.6 0.0016 P8 Cb GC CATTTGCTAG (4) 1.6 0.0016 P8 Cb GC TGGTCTAGGA 1.6 0.0016 Cb medulloblastoma GTGGCTCATA (21) 23.1 0.0231 Cb medulloblastoma GTTTTCTAGT (2) 13.9 0.0139 Cb medulloblastoma GCCAAAAAAA (23) 9.2 0.0092 Cb medulloblastoma TCTCTGAATG (4) 6.9 0.0069 Cb medulloblastoma AACTGTACAA (2) 2.3 0.0023 P8 GC+1d culture GTGGCTCATA (21) 26.3 0.0263 P8 GC+1d culture GTTTTCTAGT (2) 9.1 0.0091 P8 GC+1d culture GCCAAAAAAA (23) 8 0.008 P8 GC+1d culture CATTTGCTAG (4) 6.8 0.0068 P8 GC+1d culture TCTCTGAATG (4) 3.4 0.0034 P8 GC+1d culture AACTGTACAA (2) 2.3 0.0023 P8 GC+1d culture TCTTTGAATG (4) 2.3 0.0023 P8 GC+1d culture ATTTTTTTTT (36) 1.1 0.0011 P8 GC+1d culture CTACTCTTCT (2) 1.1 0.0011 P8 GC+1d culture GGGAGCTCCA (2) 1.1 0.0011 P8 GC+1d culture TGCCTGCTTT 1.1 0.0011 P8 GC+SHH+1d culture GTGGCTCATA (21) 24.6 0.0246 P8 GC+SHH+1d culture GTTTTCTAGT (2) 15.2 0.0152 P8 GC+SHH+1d culture GCCAAAAAAA (23) 10.5 0.0105 P8 GC+SHH+1d culture TCTCTGAATG (4) 8.2 0.0082 P8 GC+SHH+1d culture ATTTTTTTTT (36) 3.5 0.0035 P8 GC+SHH+1d culture CATTTGCTAG (4) 2.3 0.0023 P8 GC+SHH+1d culture TCTTTGAATG (4) 2.3 0.0023 P8 GC+SHH+1d culture GGGAGCTCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture TCAACTTCAG 1.2 0.0012 3T3 fibroblasts GTGGCTCATA (21) 24.5 0.0245 3T3 fibroblasts GGGAGCTCCA (2) 10.5 0.0105 E15 cortex GTGGCTCATA (21) 39.6 0.0396 E15 cortex GGGAGCTCCA (2) 9.9 0.0099 E15 cortex GTTTTCTAGT (2) 9.9 0.0099 E15 cortex CTGGAAAAAA (10) 4.9 0.0049 E15 cortex GAGATCAGCT (5) 4.9 0.0049 E15 cortex GCCAAAAAAA (23) 4.9 0.0049 P1 cortex GTGGCTCATA (21) 27.3 0.0273 P1 cortex GCCAAAAAAA (23) 9.1 0.0091 P1 cortex ATTTTTTTTT (36) 4.5 0.0045 Hypothalamus GTGGCTCATA (21) 30.8 0.0308 Hypothalamus GCCAAAAAAA (23) 10.9 0.0109 Hypothalamus GTTTTCTAGT (2) 7.2 0.0072 Hypothalamus TCTCTGAATG (4) 5.4 0.0054 Hypothalamus GAGATCAGCT (5) 1.8 0.0018 E12.5 retina GTGGCTCATA (21) 82.6 0.0826 E12.5 retina GTTTTCTAGT (2) 7.5 0.0075 E12.5 retina CATTTGCTAG (4) 3.8 0.0038 E12.5 retina GGGAGCTCCA (2) 3.8 0.0038 E12.5 retina AAACTTGAAA (4) 1.9 0.0019 E12.5 retina CTGGAAAAAA (10) 1.9 0.0019 E14.5 retina GTGGCTCATA (21) 49.2 0.0492 E14.5 retina GTTTTCTAGT (2) 12.8 0.0128 E14.5 retina GCCAAAAAAA (23) 9.1 0.0091 E14.5 retina TCTCTGAATG (4) 5.5 0.0055 E14.5 retina CATTTGCTAG (4) 3.6 0.0036 E14.5 retina AACTGTACAA (2) 1.8 0.0018 E14.5 retina ATTTTTTTTT (36) 1.8 0.0018 E14.5 retina CTACTCTTCT (2) 1.8 0.0018 E14.5 retina TCAACTTCAG 1.8 0.0018 E14.5 retina TGGGGGATTC (3) 1.8 0.0018 E16.5 retina GTGGCTCATA (21) 34.4 0.0344 E16.5 retina GTTTTCTAGT (2) 10.9 0.0109 E16.5 retina GCCAAAAAAA (23) 9.1 0.0091 E16.5 retina TCTCTGAATG (4) 7.2 0.0072 E16.5 retina CATTTGCTAG (4) 1.8 0.0018 E16.5 retina CTACTCTTCT (2) 1.8 0.0018 E16.5 retina TCAACTTCAG 1.8 0.0018 E18.5 retina GTGGCTCATA (21) 47.3 0.0473 E18.5 retina GCCAAAAAAA (23) 25.5 0.0255 E18.5 retina TCTCTGAATG (4) 9.1 0.0091 E18.5 retina CATTTGCTAG (4) 3.6 0.0036 E18.5 retina GTTTTCTAGT (2) 3.6 0.0036 E18.5 retina TGGGGGATTC (3) 3.6 0.0036 E18.5 retina AACTGTACAA (2) 1.8 0.0018 E18.5 retina ATTTTTTTTT (36) 1.8 0.0018 E18.5 retina CTGGAAAAAA (10) 1.8 0.0018 P0.5 retina GTGGCTCATA (21) 41.2 0.0412 P0.5 retina GTTTTCTAGT (2) 7.9 0.0079 P0.5 retina TCTCTGAATG (4) 5.9 0.0059 P0.5 retina ATTTTTTTTT (36) 3.9 0.0039 P0.5 retina GGGAGCTCCA (2) 3.9 0.0039 P0.5 retina CTGGAAAAAA (10) 2 0.002 P0.5 retina GCCAAAAAAA (23) 2 0.002 P2.5 retina GTGGCTCATA (21) 49.3 0.0493 P2.5 retina GTTTTCTAGT (2) 17.6 0.0176 P2.5 retina CATTTGCTAG (4) 10.6 0.0106 P2.5 retina GCCAAAAAAA (23) 8.8 0.0088 P2.5 retina TCTCTGAATG (4) 8.8 0.0088 P2.5 retina ATTTTTTTTT (36) 3.5 0.0035 P2.5 retina TCTTTGAATG (4) 1.8 0.0018 P4.5 retina GTGGCTCATA (21) 53.5 0.0535 P4.5 retina TCTCTGAATG (4) 19.8 0.0198 P4.5 retina GTTTTCTAGT (2) 15.9 0.0159 P4.5 retina GCCAAAAAAA (23) 11.9 0.0119 P4.5 retina ATTTTTTTTT (36) 4 0.004 P4.5 retina CATTTGCTAG (4) 4 0.004 P4.5 retina CTGGAAAAAA (10) 2 0.002 P4.5 retina TCTTTGAATG (4) 2 0.002 P4.5 retina TGCCTGCTTT 2 0.002 P6.5 retina GTGGCTCATA (21) 33.3 0.0333 P6.5 retina TCTCTGAATG (4) 30 0.03 P6.5 retina GCCAAAAAAA (23) 11.7 0.0117 P6.5 retina CATTTGCTAG (4) 1.7 0.0017 P6.5 retina GTTTTCTAGT (2) 1.7 0.0017 P6.5 retina TGCCTGCTTT 1.7 0.0017 P6.5 retina TTGAAAAACA (9) 1.7 0.0017 P10.5 crx- retina GTGGCTCATA (21) 33.4 0.0334 P10.5 crx- retina TCTCTGAATG (4) 26 0.026 P10.5 crx- retina GCCAAAAAAA (23) 9.3 0.0093 P10.5 crx- retina GTTTTCTAGT (2) 5.6 0.0056 P10.5 crx- retina GAGATCAGCT (5) 1.9 0.0019 P10.5 crx- retina GGGAGCTCCA (2) 1.9 0.0019 P10.5 crx- retina TGCCTGCTTT 1.9 0.0019 P10.5 crx- retina TGGTCTAGGA 1.9 0.0019 P10.5 crx+ retina GTGGCTCATA (21) 38.4 0.0384 P10.5 crx+ retina TCTCTGAATG (4) 34.6 0.0346 P10.5 crx+ retina GCCAAAAAAA (23) 17.3 0.0173 P10.5 crx+ retina GTTTTCTAGT (2) 5.8 0.0058 P10.5 crx+ retina AACTGTACAA (2) 3.8 0.0038 P10.5 crx+ retina CATTTGCTAG (4) 3.8 0.0038 P10.5 crx+ retina GGGAGCTCCA (2) 1.9 0.0019 Adult retinal TCTCTGAATG (4) 70.4 0.0704 Adult retinal GTGGCTCATA (21) 24.1 0.0241 Adult retinal GCCAAAAAAA (23) 7.4 0.0074 Adult retinal GTTTTCTAGT (2) 7.4 0.0074 Adult retinal CATTTGCTAG (4) 3.7 0.0037 ONL TCTCTGAATG (4) 59.4 0.0594 ONL GTGGCTCATA (21) 49.8 0.0498 ONL GTTTTCTAGT (2) 7.7 0.0077 ONL GCCAAAAAAA (23) 3.8 0.0038 ONL TTGAAAAACA (9) 3.8 0.0038 ONL AAACTTGAAA (4) 1.9 0.0019 ONL CTGGAAAAAA (10) 1.9 0.0019 ONL GGGAGCTCCA (2) 1.9 0.0019 ONL TGCCTGCTTT 1.9 0.0019 ONL TGGTCTAGGA 1.9 0.0019