Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.216227
Csnk1d
casein kinase 1, delta
11
104318
Mm.216227
D930010H05Rik
RIKEN cDNA D930010H05 gene
11
320154
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 140 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GGTTTCAACT (
7
)
11.4
0.0114
P8 Cb GC
TTTGCAGAGA (
4
)
4.9
0.0049
P8 Cb GC
TTTGTGCCAC
(
9
)
4.9
0.0049
P8 Cb GC
GGGCTGGGGA (
7
)
3.3
0.0033
P8 Cb GC
GGGGTGGGAA (
5
)
1.6
0.0016
P8 Cb GC
GTGATGGAAG (
3
)
1.6
0.0016
P8 Cb GC
TACATACATA (
4
)
1.6
0.0016
P8 Cb GC
TATATATGTA (
8
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
TTTGCAGAGA (
4
)
13.9
0.0139
Cb medulloblastoma
GGTTTCAACT (
7
)
6.9
0.0069
Cb medulloblastoma
GGGCTGGGAA
(
10
)
4.6
0.0046
Cb medulloblastoma
GGGGTGGGAA (
5
)
2.3
0.0023
Cb medulloblastoma
GTGATGGAAG (
3
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GGTTTCAACT (
7
)
20.5
0.0205
P8 GC+1d culture
GCTTCTCCCT
(
4
)
4.6
0.0046
P8 GC+1d culture
CACTGGGCTG (
6
)
1.1
0.0011
P8 GC+1d culture
GGGCTGGGAC
(
2
)
1.1
0.0011
P8 GC+1d culture
GTGATGGAAG (
3
)
1.1
0.0011
P8 GC+1d culture
TATATATGTA (
8
)
1.1
0.0011
P8 GC+1d culture
TTAGTGTTCT (
3
)
1.1
0.0011
P8 GC+1d culture
TTTGCAGAGA (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GGTTTCAACT (
7
)
24.6
0.0246
P8 GC+SHH+1d culture
TTTGCAGAGA (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
GCTTCTCCCT
(
4
)
2.3
0.0023
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GCTTCTCCCT
(
4
)
3.5
0.0035
3T3 fibroblasts
TTTGCAGAGA (
4
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
GGTTTCAACT (
7
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
GGTTTCAACT (
7
)
13.6
0.0136
P1 cortex
GCTTCTCCCT
(
4
)
4.5
0.0045
P1 cortex
GGCTTCTCCC
(
2
)
4.5
0.0045
P1 cortex
GGGCTGGGAA
(
10
)
4.5
0.0045
P1 cortex
GGGCTGGGGA (
7
)
4.5
0.0045
P1 cortex
GGGGTGGGAA (
5
)
4.5
0.0045
P1 cortex
TATATATGTA (
8
)
4.5
0.0045
P1 cortex
TTTGCAGAGA (
4
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
TACATACATA (
4
)
9.1
0.0091
Hypothalamus
GGATGGGACA (
5
)
5.4
0.0054
Hypothalamus
GGTTTCAACT (
7
)
5.4
0.0054
Hypothalamus
TTTGCAGAGA (
4
)
5.4
0.0054
Hypothalamus
CACTGGGCTG (
6
)
1.8
0.0018
Hypothalamus
GCTTCTCCCT
(
4
)
1.8
0.0018
Hypothalamus
GGGCTGGGGA (
7
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
TTTGCAGAGA (
4
)
13.1
0.0131
E12.5 retina
GGTTTCAACT (
7
)
11.3
0.0113
E12.5 retina
GCTTCTCCCT
(
4
)
3.8
0.0038
E12.5 retina
CACTGGGCTG (
6
)
1.9
0.0019
E12.5 retina
TATATATGTA (
8
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
GGTTTCAACT (
7
)
23.7
0.0237
E14.5 retina
GGGCTGGGGA (
7
)
5.5
0.0055
E14.5 retina
GTGATGGAAG (
3
)
3.6
0.0036
E14.5 retina
TTTGCAGAGA (
4
)
3.6
0.0036
E14.5 retina
GCCCAGGAAG (
8
)
1.8
0.0018
E14.5 retina
GCTTCTCCTT (
8
)
1.8
0.0018
E14.5 retina
TATATATGTA (
8
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GGTTTCAACT (
7
)
14.5
0.0145
E16.5 retina
TTTGCAGAGA (
4
)
7.2
0.0072
E16.5 retina
GCCCAGGAAG (
8
)
3.6
0.0036
E16.5 retina
GCTTCTCCCT
(
4
)
3.6
0.0036
E16.5 retina
GGGCTGGGGA (
7
)
3.6
0.0036
E16.5 retina
TACATACATA (
4
)
3.6
0.0036
E16.5 retina
CACTGGGCTG (
6
)
1.8
0.0018
E16.5 retina
GCTTCTCCTT (
8
)
1.8
0.0018
E16.5 retina
GGGCTGGGAC
(
2
)
1.8
0.0018
E16.5 retina
TATATATGTA (
8
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
GGGCTGGGGA (
7
)
16.4
0.0164
E18.5 retina
GGTTTCAACT (
7
)
16.4
0.0164
E18.5 retina
TTTGCAGAGA (
4
)
7.3
0.0073
E18.5 retina
CACTGGGCTG (
6
)
1.8
0.0018
E18.5 retina
GCTTCTCCCT
(
4
)
1.8
0.0018
E18.5 retina
GGATGGGACA (
5
)
1.8
0.0018
E18.5 retina
GGGCTGGGAC
(
2
)
1.8
0.0018
E18.5 retina
GGGGTGGGAA (
5
)
1.8
0.0018
E18.5 retina
TACATACATA (
4
)
1.8
0.0018
E18.5 retina
TATATATGTA (
8
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GGTTTCAACT (
7
)
7.9
0.0079
P0.5 retina
TTTGCAGAGA (
4
)
5.9
0.0059
P0.5 retina
GCTTCTCCTT (
8
)
2
0.002
P0.5 retina
GGCTTCTCCC
(
2
)
2
0.002
P0.5 retina
GGGCTGGGAC
(
2
)
2
0.002
P0.5 retina
GGGGTGGGAA (
5
)
2
0.002
P0.5 retina
TATATATGTA (
8
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GGTTTCAACT (
7
)
24.6
0.0246
P2.5 retina
TTTGCAGAGA (
4
)
10.6
0.0106
P2.5 retina
GCTTCTCCCT
(
4
)
1.8
0.0018
P2.5 retina
GGCTTCTCCC
(
2
)
1.8
0.0018
P2.5 retina
GGGCTGGGGA (
7
)
1.8
0.0018
P2.5 retina
GTGATGGAAG (
3
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
GGTTTCAACT (
7
)
15.9
0.0159
P4.5 retina
TTTGCAGAGA (
4
)
7.9
0.0079
P4.5 retina
TACATACATA (
4
)
5.9
0.0059
P4.5 retina
CACTGGGCTG (
6
)
2
0.002
P4.5 retina
GCTTCTCCCT
(
4
)
2
0.002
P4.5 retina
GGGCTGGGAC
(
2
)
2
0.002
P4.5 retina
GTGATGGAAG (
3
)
2
0.002
P4.5 retina
TATATATGTA (
8
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GGTTTCAACT (
7
)
8.3
0.0083
P6.5 retina
GCTTCTCCCT
(
4
)
5
0.005
P6.5 retina
CACTGGGCTG (
6
)
1.7
0.0017
P6.5 retina
TTTGCAGAGA (
4
)
1.7
0.0017
P6.5 retina
TTTTTCTGTA (
6
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
GGTTTCAACT (
7
)
13
0.013
P10.5 crx- retina
TACATACATA (
4
)
3.7
0.0037
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
TTTGCAGAGA (
4
)
5.8
0.0058
P10.5 crx+ retina
GGTTTCAACT (
7
)
3.8
0.0038
P10.5 crx+ retina
TTTTTCTGTA (
6
)
3.8
0.0038
P10.5 crx+ retina
TTAGTGTTCT (
3
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GGTTTCAACT (
7
)
5.6
0.0056
Adult retinal
TTTGCAGAGA (
4
)
5.6
0.0056
Adult retinal
TACATACATA (
4
)
3.7
0.0037
Adult retinal
CACTGGGCTG (
6
)
1.9
0.0019
Adult retinal
GCTTCTCCCT
(
4
)
1.9
0.0019
Adult retinal
TATATATGTA (
8
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GGGCTGGGGA (
7
)
23
0.023
ONL
TTTGCAGAGA (
4
)
7.7
0.0077
ONL
GGTTTCAACT (
7
)
5.7
0.0057
ONL
CACTGGGCTG (
6
)
1.9
0.0019
ONL
GTGATGGAAG (
3
)
1.9
0.0019
ONL
TACATACATA (
4
)
1.9
0.0019
ONL
TTAGTGTTCT (
3
)
1.9
0.0019
ONL
TTTGTGCCAC
(
9
)
1.9
0.0019
