Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.220885	Ncdn	neurochondrin	4		26562
Gene Ontology	bone resorption | cellular_component unknown | molecular_function unknown
Human Homolog	NCDN[neurochondrin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGACACTCA (3) 14.7 0.0147 P8 Cb GC AAAGTGGCAG (6) 1.6 0.0016 P8 Cb GC CGGATTCTAG 1.6 0.0016 P8 Cb GC GCTAAGGCTT (4) 1.6 0.0016 Cb medulloblastoma TGGACACTCA (3) 76.3 0.0763 Cb medulloblastoma TGCACAGCTT (4) 4.6 0.0046 P8 GC+1d culture TGGACACTCA (3) 11.4 0.0114 P8 GC+1d culture GCTAAGGCTT (4) 4.6 0.0046 P8 GC+1d culture ATGACACCAG 2.3 0.0023 P8 GC+1d culture GTTTCCCTGT (3) 1.1 0.0011 P8 GC+1d culture TGCACAGCTT (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGACACTCA (3) 15.2 0.0152 P8 GC+SHH+1d culture GCTAAGGCTT (4) 8.2 0.0082 P8 GC+SHH+1d culture AAAGTGGCAG (6) 1.2 0.0012 P8 GC+SHH+1d culture ATGACACCAG 1.2 0.0012 P8 GC+SHH+1d culture CGGATTCTAG 1.2 0.0012 P8 GC+SHH+1d culture TTGCAGCAGA (5) 1.2 0.0012 3T3 fibroblasts GCTAAGGCTT (4) 10.5 0.0105 3T3 fibroblasts TGGACACTCA (3) 3.5 0.0035 E15 cortex GCTAAGGCTT (4) 4.9 0.0049 E15 cortex TGCACAGCTT (4) 4.9 0.0049 E15 cortex TGGACACTCA (3) 4.9 0.0049 P1 cortex TGGACACTCA (3) 18.2 0.0182 Hypothalamus TGGACACTCA (3) 177.5 0.1775 Hypothalamus TGCACAGCTT (4) 19.9 0.0199 Hypothalamus TTGCAGCAGA (5) 9.1 0.0091 Hypothalamus TGCCCTGCCG (2) 7.2 0.0072 Hypothalamus CGGATTCTAG 1.8 0.0018 Hypothalamus GTTTCCCTGT (3) 1.8 0.0018 E12.5 retina TGGACACTCA (3) 5.6 0.0056 E12.5 retina ATGACACCAG 3.8 0.0038 E12.5 retina GCTAAGGCTT (4) 3.8 0.0038 E12.5 retina AAGCTGCAGG (8) 1.9 0.0019 E14.5 retina TGCACAGCTT (4) 12.8 0.0128 E14.5 retina AAGCTGCAGG (8) 9.1 0.0091 E14.5 retina TGGACACTCA (3) 5.5 0.0055 E14.5 retina GCTAAGGCTT (4) 3.6 0.0036 E14.5 retina CGGATTCTAG 1.8 0.0018 E16.5 retina TGGACACTCA (3) 14.5 0.0145 E16.5 retina AAAGTGGCAG (6) 1.8 0.0018 E16.5 retina AAGCTGCAGG (8) 1.8 0.0018 E16.5 retina GCTAAGGCTT (4) 1.8 0.0018 E18.5 retina TGGACACTCA (3) 16.4 0.0164 E18.5 retina AAGCTGCAGG (8) 14.6 0.0146 E18.5 retina GCTAAGGCTT (4) 1.8 0.0018 P0.5 retina AAGCTGCAGG (8) 21.6 0.0216 P0.5 retina TGGACACTCA (3) 11.8 0.0118 P2.5 retina TGGACACTCA (3) 10.6 0.0106 P2.5 retina AAGCTGCAGG (8) 7 0.007 P2.5 retina GCTAAGGCTT (4) 3.5 0.0035 P4.5 retina TGGACACTCA (3) 17.8 0.0178 P4.5 retina AAGCTGCAGG (8) 13.9 0.0139 P4.5 retina GCTAAGGCTT (4) 5.9 0.0059 P4.5 retina CGGATTCTAG 2 0.002 P6.5 retina TGGACACTCA (3) 13.3 0.0133 P6.5 retina AAGCTGCAGG (8) 8.3 0.0083 P6.5 retina TGCACAGCTT (4) 3.3 0.0033 P6.5 retina ATGACACCAG 1.7 0.0017 P6.5 retina GCTAAGGCTT (4) 1.7 0.0017 P6.5 retina GTTTCCCTGT (3) 1.7 0.0017 P6.5 retina TTGCAGCAGA (5) 1.7 0.0017 P10.5 crx- retina TGGACACTCA (3) 33.4 0.0334 P10.5 crx- retina GCTAAGGCTT (4) 5.6 0.0056 P10.5 crx- retina AAGCTGCAGG (8) 1.9 0.0019 P10.5 crx- retina TGCACAGCTT (4) 1.9 0.0019 P10.5 crx+ retina TGGACACTCA (3) 15.4 0.0154 P10.5 crx+ retina ATGACACCAG 1.9 0.0019 Adult retinal TGGACACTCA (3) 18.5 0.0185 Adult retinal AAGCTGCAGG (8) 9.3 0.0093 Adult retinal GTTTCCCTGT (3) 1.9 0.0019 ONL TGGACACTCA (3) 7.7 0.0077 ONL AAGCTGCAGG (8) 3.8 0.0038