Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.220946	Araf1	v-raf murine sarcoma 3611 viral oncogene homolog 1	X	X A2-A3.1 (X 6.2 cM)	11836
Gene Ontology	ATP binding | cell growth and/or maintenance | diacylglycerol binding | intracellular signaling cascade | mitochondrion | protein amino acid phosphorylation | protein binding | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | receptor signaling protein activity | regulation of cell cycle | signal transduction | transferase activity
Human Homolog	ARAF1[v-raf murine sarcoma 3611 viral oncogene homolog 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 15 In Situ Hybridization Images

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SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAGGTGGAG (6) 4.9 0.0049 P8 Cb GC TAGATTTGGG 4.9 0.0049 P8 Cb GC AGACTGTCTT (2) 1.6 0.0016 P8 Cb GC CCGCCTGTGG 1.6 0.0016 P8 Cb GC GGATTGTGGG (7) 1.6 0.0016 P8 Cb GC TAGCCCAGGC (30) 1.6 0.0016 P8 Cb GC TCATTATGAT 1.6 0.0016 Cb medulloblastoma TCATTATGAT 13.9 0.0139 Cb medulloblastoma CCGCCTGTGG 6.9 0.0069 Cb medulloblastoma GACTCAGCTC (3) 4.6 0.0046 Cb medulloblastoma TAGCCCAGGC (30) 4.6 0.0046 Cb medulloblastoma GGGAGGGGGG (14) 2.3 0.0023 Cb medulloblastoma TAGATTTGGG 2.3 0.0023 Cb medulloblastoma TAGCCCAAGC (5) 2.3 0.0023 P8 GC+1d culture GGAGGTGGAG (6) 33.1 0.0331 P8 GC+1d culture TCATTATGAT 4.6 0.0046 P8 GC+1d culture CCGCCTGTGG 3.4 0.0034 P8 GC+1d culture AGACTGTCTT (2) 1.1 0.0011 P8 GC+1d culture CCAAGTTTTA (2) 1.1 0.0011 P8 GC+1d culture GGGAGGGGGG (14) 1.1 0.0011 P8 GC+1d culture TAGCCCAGGC (30) 1.1 0.0011 P8 GC+SHH+1d culture GGAGGTGGAG (6) 14.1 0.0141 P8 GC+SHH+1d culture TCATTATGAT 10.5 0.0105 P8 GC+SHH+1d culture TAGCCCAGGC (30) 8.2 0.0082 P8 GC+SHH+1d culture CCGCCTGTGG 4.7 0.0047 P8 GC+SHH+1d culture AGACTGTCTT (2) 2.3 0.0023 P8 GC+SHH+1d culture GACTCAGCTC (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGGGGGG (14) 1.2 0.0012 P8 GC+SHH+1d culture TAGATTTGGG 1.2 0.0012 3T3 fibroblasts TAGCCCAGGC (30) 14 0.014 3T3 fibroblasts CCAAGTTTTA (2) 7 0.007 3T3 fibroblasts GGAGGTGGAG (6) 7 0.007 3T3 fibroblasts AGACTGTCTT (2) 3.5 0.0035 3T3 fibroblasts CCAAGGCACA (4) 3.5 0.0035 E15 cortex TAGCCCAGGC (30) 24.7 0.0247 E15 cortex CCGCCTGTGG 14.8 0.0148 E15 cortex GGAGGTGGAG (6) 14.8 0.0148 E15 cortex CCAAGGCACA (4) 4.9 0.0049 E15 cortex GACTCAGCTC (3) 4.9 0.0049 P1 cortex TCATTATGAT 18.2 0.0182 P1 cortex CCGCCTGTGG 4.5 0.0045 P1 cortex GATTCAGCTG (2) 4.5 0.0045 P1 cortex GGGAGGGGGG (14) 4.5 0.0045 Hypothalamus TCATTATGAT 63.4 0.0634 Hypothalamus TAGCCCAGGC (30) 7.2 0.0072 Hypothalamus GGAGGTGGAG (6) 5.4 0.0054 Hypothalamus CCGCCTGTGG 3.6 0.0036 Hypothalamus GGATTGTGGG (7) 1.8 0.0018 Hypothalamus GGGAGGGGGG (14) 1.8 0.0018 E12.5 retina TAGATTTGGG 16.9 0.0169 E12.5 retina TAGCCCAGGC (30) 7.5 0.0075 E12.5 retina CCAAGGCACA (4) 1.9 0.0019 E12.5 retina GGATTGTGGG (7) 1.9 0.0019 E12.5 retina GGGAGGGGGG (14) 1.9 0.0019 E14.5 retina TAGCCCAGGC (30) 12.8 0.0128 E14.5 retina TCATTATGAT 9.1 0.0091 E14.5 retina GATTCAGCTG (2) 1.8 0.0018 E14.5 retina GGAGGTGGAG (6) 1.8 0.0018 E14.5 retina TAGCCCAAGC (5) 1.8 0.0018 E16.5 retina TAGCCCAGGC (30) 7.2 0.0072 E16.5 retina GGAGGTGGAG (6) 5.4 0.0054 E16.5 retina TCATTATGAT 5.4 0.0054 E16.5 retina AGACTGTCTT (2) 1.8 0.0018 E16.5 retina CCGCCTGTGG 1.8 0.0018 E16.5 retina GACTCAGCTC (3) 1.8 0.0018 E16.5 retina GATTCAGCTG (2) 1.8 0.0018 E16.5 retina TAGATTTGGG 1.8 0.0018 E18.5 retina TAGATTTGGG 10.9 0.0109 E18.5 retina TCATTATGAT 9.1 0.0091 E18.5 retina TAGCCCAGGC (30) 7.3 0.0073 E18.5 retina GGAGGTGGAG (6) 3.6 0.0036 P0.5 retina CCGCCTGTGG 7.9 0.0079 P0.5 retina GGAGGTGGAG (6) 5.9 0.0059 P0.5 retina TAGCCCAGGC (30) 5.9 0.0059 P0.5 retina GGGAGGGGGG (14) 3.9 0.0039 P0.5 retina TAGATTTGGG 3.9 0.0039 P0.5 retina CCAAGGCACA (4) 2 0.002 P0.5 retina CCAAGTTTTA (2) 2 0.002 P0.5 retina GGATTGTGGG (7) 2 0.002 P0.5 retina TCATTATGAT 2 0.002 P2.5 retina TAGATTTGGG 17.6 0.0176 P2.5 retina TAGCCCAGGC (30) 8.8 0.0088 P2.5 retina GATTCAGCTG (2) 3.5 0.0035 P2.5 retina GGAGGTGGAG (6) 3.5 0.0035 P2.5 retina AGACTGTCTT (2) 1.8 0.0018 P2.5 retina CCAAGGCACA (4) 1.8 0.0018 P2.5 retina GACTCAGCTC (3) 1.8 0.0018 P2.5 retina TCATTATGAT 1.8 0.0018 P4.5 retina TAGATTTGGG 15.9 0.0159 P4.5 retina TCATTATGAT 11.9 0.0119 P4.5 retina GGAGGTGGAG (6) 5.9 0.0059 P4.5 retina GATTCAGCTG (2) 2 0.002 P4.5 retina TAGCCCAGGC (30) 2 0.002 P6.5 retina TAGATTTGGG 21.7 0.0217 P6.5 retina TCATTATGAT 8.3 0.0083 P6.5 retina CCGCCTGTGG 5 0.005 P6.5 retina TAGCCCAGGC (30) 5 0.005 P6.5 retina GATTCAGCTG (2) 3.3 0.0033 P6.5 retina GGAGGTGGAG (6) 3.3 0.0033 P6.5 retina AGACTGTCTT (2) 1.7 0.0017 P6.5 retina CCAAGGCACA (4) 1.7 0.0017 P6.5 retina GGATTGTGGG (7) 1.7 0.0017 P6.5 retina TAGCCCAAGC (5) 1.7 0.0017 P10.5 crx- retina TCATTATGAT 11.1 0.0111 P10.5 crx- retina GGAGGTGGAG (6) 7.4 0.0074 P10.5 crx- retina GACTCAGCTC (3) 5.6 0.0056 P10.5 crx- retina TAGATTTGGG 5.6 0.0056 P10.5 crx- retina AGACTGTCTT (2) 3.7 0.0037 P10.5 crx- retina CCGCCTGTGG 3.7 0.0037 P10.5 crx- retina GATTCAGCTG (2) 3.7 0.0037 P10.5 crx- retina TAGCCCAAGC (5) 3.7 0.0037 P10.5 crx- retina GGATTGTGGG (7) 1.9 0.0019 P10.5 crx- retina TAGCCCAGGC (30) 1.9 0.0019 P10.5 crx+ retina TAGATTTGGG 17.3 0.0173 P10.5 crx+ retina TCATTATGAT 9.6 0.0096 P10.5 crx+ retina GATTCAGCTG (2) 7.7 0.0077 P10.5 crx+ retina GGAGGTGGAG (6) 5.8 0.0058 P10.5 crx+ retina CCGCCTGTGG 3.8 0.0038 P10.5 crx+ retina GACTCAGCTC (3) 3.8 0.0038 P10.5 crx+ retina TAGCCCAGGC (30) 3.8 0.0038 P10.5 crx+ retina GGATTGTGGG (7) 1.9 0.0019 Adult retinal TAGATTTGGG 18.5 0.0185 Adult retinal CCGCCTGTGG 13 0.013 Adult retinal TCATTATGAT 9.3 0.0093 Adult retinal AGACTGTCTT (2) 3.7 0.0037 Adult retinal GACTCAGCTC (3) 3.7 0.0037 Adult retinal GATTCAGCTG (2) 1.9 0.0019 Adult retinal GGAGGTGGAG (6) 1.9 0.0019 Adult retinal TAGCCCAGGC (30) 1.9 0.0019 ONL TAGCCCAGGC (30) 9.6 0.0096 ONL TAGATTTGGG 5.7 0.0057 ONL TCATTATGAT 5.7 0.0057 ONL GGAGGTGGAG (6) 3.8 0.0038 ONL CCGCCTGTGG 1.9 0.0019 ONL GACTCAGCTC (3) 1.9 0.0019 ONL GATTCAGCTG (2) 1.9 0.0019