Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.222497
Helic1
helicase, ATP binding 1
10
77987
Mm.222497
D630041L21
hypothetical protein D630041L21
10
209859
Mm.222497
BC023451
cDNA sequence BC023451
407829
Mm.222497
D430001L07Rik
RIKEN cDNA D430001L07 gene
10
320584
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 68 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTGGTTCACA (
32
)
14.7
0.0147
P8 Cb GC
TTTTTTTTTT (
433
)
4.9
0.0049
P8 Cb GC
TAGAAATCTT
(
5
)
3.3
0.0033
P8 Cb GC
AGGAGGAGTG
(
4
)
1.6
0.0016
P8 Cb GC
GAGACAAAGG (
9
)
1.6
0.0016
Cb medulloblastoma
GTGGTTCACA (
32
)
11.6
0.0116
Cb medulloblastoma
CTCGCAATGC
(
5
)
2.3
0.0023
Cb medulloblastoma
TTTTTTTTTT (
433
)
2.3
0.0023
P8 GC+1d culture
GTGGTTCACA (
32
)
18.3
0.0183
P8 GC+1d culture
TTTTTTTTTT (
433
)
13.7
0.0137
P8 GC+1d culture
AAATCCATTG (
6
)
1.1
0.0011
P8 GC+1d culture
AGGAGGAGTG
(
4
)
1.1
0.0011
P8 GC+1d culture
TAGAAATCTT
(
5
)
1.1
0.0011
P8 GC+SHH+1d culture
GTGGTTCACA (
32
)
31.6
0.0316
P8 GC+SHH+1d culture
TTTTTTTTTT (
433
)
5.9
0.0059
P8 GC+SHH+1d culture
AAATCCATTG (
6
)
3.5
0.0035
P8 GC+SHH+1d culture
GAGACAAAGG (
9
)
2.3
0.0023
P8 GC+SHH+1d culture
TAGAAATCTT
(
5
)
1.2
0.0012
3T3 fibroblasts
GTGGTTCACA (
32
)
17.5
0.0175
3T3 fibroblasts
TAGAAATCTT
(
5
)
3.5
0.0035
E15 cortex
AGGAGGAGTG
(
4
)
4.9
0.0049
E15 cortex
GTGGTTCACA (
32
)
4.9
0.0049
E15 cortex
TTTTTTTTTT (
433
)
4.9
0.0049
P1 cortex
GTGGTTCACA (
32
)
27.3
0.0273
P1 cortex
TTTTTTTTTT (
433
)
4.5
0.0045
Hypothalamus
GTGGTTCACA (
32
)
12.7
0.0127
Hypothalamus
TTTTTTTTTT (
433
)
7.2
0.0072
Hypothalamus
CTCGCAATGC
(
5
)
3.6
0.0036
Hypothalamus
GAGACAAAGG (
9
)
1.8
0.0018
E12.5 retina
GTGGTTCACA (
32
)
28.2
0.0282
E12.5 retina
TTTTTTTTTT (
433
)
7.5
0.0075
E12.5 retina
AGGAGGAGTG
(
4
)
1.9
0.0019
E12.5 retina
TAGAAATCTT
(
5
)
1.9
0.0019
E14.5 retina
GTGGTTCACA (
32
)
51
0.051
E14.5 retina
TTTTTTTTTT (
433
)
23.7
0.0237
E14.5 retina
TAGAAATCTT
(
5
)
3.6
0.0036
E16.5 retina
GTGGTTCACA (
32
)
39.8
0.0398
E16.5 retina
TTTTTTTTTT (
433
)
5.4
0.0054
E16.5 retina
AGGAGGAGTG
(
4
)
1.8
0.0018
E16.5 retina
CTCGCAATGC
(
5
)
1.8
0.0018
E16.5 retina
TAGAAATCTT
(
5
)
1.8
0.0018
E18.5 retina
GTGGTTCACA (
32
)
40
0.04
E18.5 retina
TTTTTTTTTT (
433
)
10.9
0.0109
E18.5 retina
AGGAGGAGTG
(
4
)
3.6
0.0036
P0.5 retina
GTGGTTCACA (
32
)
35.3
0.0353
P0.5 retina
TTTTTTTTTT (
433
)
9.8
0.0098
P0.5 retina
TAGAAATCTT
(
5
)
3.9
0.0039
P0.5 retina
AGGAGGAGTG
(
4
)
2
0.002
P2.5 retina
GTGGTTCACA (
32
)
12.3
0.0123
P2.5 retina
TTTTTTTTTT (
433
)
7
0.007
P2.5 retina
TAGAAATCTT
(
5
)
5.3
0.0053
P2.5 retina
AGGAGGAGTG
(
4
)
1.8
0.0018
P2.5 retina
GAGACAAAGG (
9
)
1.8
0.0018
P4.5 retina
GTGGTTCACA (
32
)
33.7
0.0337
P4.5 retina
TTTTTTTTTT (
433
)
9.9
0.0099
P4.5 retina
TAGAAATCTT
(
5
)
2
0.002
P6.5 retina
GTGGTTCACA (
32
)
25
0.025
P6.5 retina
TTTTTTTTTT (
433
)
8.3
0.0083
P6.5 retina
GAGACAAAGG (
9
)
1.7
0.0017
P10.5 crx- retina
GTGGTTCACA (
32
)
20.4
0.0204
P10.5 crx+ retina
GTGGTTCACA (
32
)
32.7
0.0327
P10.5 crx+ retina
TTTTTTTTTT (
433
)
3.8
0.0038
Adult retinal
GTGGTTCACA (
32
)
33.3
0.0333
Adult retinal
TTTTTTTTTT (
433
)
7.4
0.0074
Adult retinal
GAGACAAAGG (
9
)
1.9
0.0019
ONL
GTGGTTCACA (
32
)
32.6
0.0326
ONL
TTTTTTTTTT (
433
)
3.8
0.0038
ONL
GAGACAAAGG (
9
)
1.9
0.0019
