Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.223717	Smad1	MAD homolog 1 (Drosophila)	8	8 C1	17125
Gene Ontology	BMP signaling pathway | BMP signaling pathway | common-partner SMAD protein phosphorylation | gametogenesis | homeostasis | intracellular | MAPKKK cascade | organogenesis | protein binding | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | RNA polymerase II transcription factor activity | SMAD protein heteromerization | transcription factor activity | transcription factor complex
Human Homolog	SMAD1[SMAD, mothers against DPP homolog 1 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGACCCTGCT (6) 13.1 0.0131 P8 Cb GC TACTTGAAGG (2) 3.3 0.0033 P8 Cb GC TCATTTATTG (4) 3.3 0.0033 P8 Cb GC TTGTCACCAT (2) 3.3 0.0033 Cb medulloblastoma AGACCCTGCT (6) 2.3 0.0023 Cb medulloblastoma GAAGAGCTGG (9) 2.3 0.0023 P8 GC+1d culture AGACCCTGCT (6) 11.4 0.0114 P8 GC+1d culture TTGTCACCAT (2) 2.3 0.0023 P8 GC+SHH+1d culture AGACCCTGCT (6) 18.7 0.0187 P8 GC+SHH+1d culture ATGGCGCCTC (4) 4.7 0.0047 P8 GC+SHH+1d culture TACTTGAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture TCATTTATTG (4) 1.2 0.0012 3T3 fibroblasts AGACCCTGCT (6) 10.5 0.0105 3T3 fibroblasts ATGGCGCCTC (4) 7 0.007 3T3 fibroblasts TACTTGAAGG (2) 3.5 0.0035 3T3 fibroblasts TCATTTATTG (4) 3.5 0.0035 E15 cortex AGACCCTGCT (6) 34.6 0.0346 P1 cortex AGACCCTGCT (6) 4.5 0.0045 P1 cortex CATAGTAATC 4.5 0.0045 Hypothalamus AGACCCTGCT (6) 7.2 0.0072 Hypothalamus TTGTCACCAT (2) 3.6 0.0036 E12.5 retina AGACCCTGCT (6) 7.5 0.0075 E12.5 retina ATGGCGCCTC (4) 1.9 0.0019 E12.5 retina CATAGTAATC 1.9 0.0019 E14.5 retina AGACCCTGCT (6) 14.6 0.0146 E14.5 retina TTGTCACCAT (2) 3.6 0.0036 E14.5 retina TCATTTATTG (4) 1.8 0.0018 E16.5 retina AGACCCTGCT (6) 21.7 0.0217 E16.5 retina GAAGAGCTGG (9) 3.6 0.0036 E16.5 retina TTGTCACCAT (2) 3.6 0.0036 E18.5 retina AGACCCTGCT (6) 16.4 0.0164 E18.5 retina TGTCCCACCG 3.6 0.0036 P0.5 retina ATGGCGCCTC (4) 3.9 0.0039 P0.5 retina AGACCCTGCT (6) 2 0.002 P0.5 retina CATAGTAATC 2 0.002 P0.5 retina TCATTTATTG (4) 2 0.002 P2.5 retina AGACCCTGCT (6) 10.6 0.0106 P2.5 retina TCATTTATTG (4) 1.8 0.0018 P4.5 retina AGACCCTGCT (6) 17.8 0.0178 P4.5 retina CATAGTAATC 4 0.004 P4.5 retina TCATTTATTG (4) 2 0.002 P6.5 retina AGACCCTGCT (6) 8.3 0.0083 P10.5 crx- retina AGACCCTGCT (6) 9.3 0.0093 P10.5 crx+ retina AGACCCTGCT (6) 19.2 0.0192 P10.5 crx+ retina ATGGCGCCTC (4) 1.9 0.0019 Adult retinal AGACCCTGCT (6) 14.8 0.0148 ONL AGACCCTGCT (6) 5.7 0.0057 ONL TGTCCCACCG 1.9 0.0019