Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22501	5730590C14Rik	RIKEN cDNA 5730590C14 gene	11		77097
Mm.22501	3526402J09Rik	RIKEN cDNA 3526402J09 gene	11		237960
Gene Ontology	DNA binding | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	DKFZP564D166[putative ankyrin-repeat containing protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGACTCACA (25) 14.7 0.0147 P8 Cb GC GCAAAGCAAA (3) 4.9 0.0049 P8 Cb GC TTTTATAAGA (2) 4.9 0.0049 P8 Cb GC TACAGTCTAC (8) 3.3 0.0033 Cb medulloblastoma GTGACTCACA (25) 25.4 0.0254 Cb medulloblastoma GCAAAGCAAA (3) 4.6 0.0046 Cb medulloblastoma GCCTCCTTCC (6) 2.3 0.0023 Cb medulloblastoma TACAGTCTAC (8) 2.3 0.0023 Cb medulloblastoma TTTTATAAAA (5) 2.3 0.0023 P8 GC+1d culture GTGACTCACA (25) 14.8 0.0148 P8 GC+1d culture GCAAAGCAAA (3) 4.6 0.0046 P8 GC+1d culture TATACAGAGC (2) 2.3 0.0023 P8 GC+1d culture TTTTATAAAA (5) 2.3 0.0023 P8 GC+1d culture CAATGCCTTG (5) 1.1 0.0011 P8 GC+1d culture TACAGAAAAT (2) 1.1 0.0011 P8 GC+1d culture TTTTATAAGA (2) 1.1 0.0011 P8 GC+SHH+1d culture GTGACTCACA (25) 16.4 0.0164 P8 GC+SHH+1d culture GCAAAGCAAA (3) 7 0.007 P8 GC+SHH+1d culture TACAGTCTAC (8) 4.7 0.0047 P8 GC+SHH+1d culture TTTTATAAAA (5) 4.7 0.0047 P8 GC+SHH+1d culture TTTTATAAGA (2) 1.2 0.0012 3T3 fibroblasts GTGACTCACA (25) 35 0.035 3T3 fibroblasts GTCTTCTCCC (2) 3.5 0.0035 E15 cortex GTGACTCACA (25) 19.8 0.0198 P1 cortex GTGACTCACA (25) 13.6 0.0136 P1 cortex TATACAGAGC (2) 13.6 0.0136 P1 cortex TTTTATAAAA (5) 9.1 0.0091 Hypothalamus GTGACTCACA (25) 21.7 0.0217 Hypothalamus TACAGTCTAC (8) 5.4 0.0054 Hypothalamus GCAAAGCAAA (3) 1.8 0.0018 Hypothalamus TACAGAAAAT (2) 1.8 0.0018 Hypothalamus TATACAGAGC (2) 1.8 0.0018 E12.5 retina GTGACTCACA (25) 35.7 0.0357 E12.5 retina TACAGTCTAC (8) 1.9 0.0019 E12.5 retina TTTTATAAAA (5) 1.9 0.0019 E14.5 retina GTGACTCACA (25) 45.5 0.0455 E14.5 retina GTCTTCTCCC (2) 1.8 0.0018 E14.5 retina TTTTATAAAA (5) 1.8 0.0018 E16.5 retina GTGACTCACA (25) 29 0.029 E16.5 retina TTTTATAAAA (5) 3.6 0.0036 E16.5 retina GCAAAGCAAA (3) 1.8 0.0018 E18.5 retina GTGACTCACA (25) 27.3 0.0273 E18.5 retina TTTTATAAAA (5) 10.9 0.0109 E18.5 retina CAATGCCTTG (5) 1.8 0.0018 E18.5 retina GCAAAGCAAA (3) 1.8 0.0018 E18.5 retina TATACAGAGC (2) 1.8 0.0018 P0.5 retina GTGACTCACA (25) 29.4 0.0294 P0.5 retina TATACAGAGC (2) 3.9 0.0039 P0.5 retina GCCTCCTTCC (6) 2 0.002 P0.5 retina TTTTATAAAA (5) 2 0.002 P2.5 retina GTGACTCACA (25) 24.6 0.0246 P2.5 retina TTTTATAAAA (5) 12.3 0.0123 P2.5 retina TACAGTCTAC (8) 3.5 0.0035 P4.5 retina GTGACTCACA (25) 27.7 0.0277 P4.5 retina TTTTATAAAA (5) 7.9 0.0079 P4.5 retina GCAAAGCAAA (3) 2 0.002 P4.5 retina GCCTCCTTCC (6) 2 0.002 P4.5 retina TATACAGAGC (2) 2 0.002 P6.5 retina GTGACTCACA (25) 26.7 0.0267 P6.5 retina TTTTATAAAA (5) 6.7 0.0067 P6.5 retina TACAGTCTAC (8) 3.3 0.0033 P6.5 retina GCAAAGCAAA (3) 1.7 0.0017 P6.5 retina TATACAGAGC (2) 1.7 0.0017 P10.5 crx- retina GTGACTCACA (25) 26 0.026 P10.5 crx- retina GTCTTCTCCC (2) 5.6 0.0056 P10.5 crx- retina CAATGCCTTG (5) 1.9 0.0019 P10.5 crx- retina TACAGTCTAC (8) 1.9 0.0019 P10.5 crx- retina TTTTATAAAA (5) 1.9 0.0019 P10.5 crx+ retina GTGACTCACA (25) 30.8 0.0308 P10.5 crx+ retina TACAGAAAAT (2) 1.9 0.0019 P10.5 crx+ retina TACAGTCTAC (8) 1.9 0.0019 P10.5 crx+ retina TATACAGAGC (2) 1.9 0.0019 Adult retinal GTGACTCACA (25) 33.3 0.0333 Adult retinal GCAAAGCAAA (3) 1.9 0.0019 ONL GTGACTCACA (25) 34.5 0.0345 ONL TTTTATAAAA (5) 5.7 0.0057 ONL TATACAGAGC (2) 1.9 0.0019