Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.226860
4930509G22Rik
RIKEN cDNA 4930509G22 gene
16
67734
Mm.226860
Zc3hdc7
zinc finger CCCH type domain containing 7
16
106205
Human Homolog
ZC3HDC7[zinc finger CCCH type domain containing 7]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 76 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TAATAAAAAT (
10
)
32.6
0.0326
P8 Cb GC
CACATCAATA
(
4
)
4.9
0.0049
P8 Cb GC
TAATAAAATT
(
6
)
3.3
0.0033
P8 Cb GC
AGGGAGAGGG (
4
)
1.6
0.0016
P8 Cb GC
ATGGATGAAA
(
7
)
1.6
0.0016
P8 Cb GC
GAAAAAAATA
(
16
)
1.6
0.0016
P8 Cb GC
GGGGTGGGGG (
6
)
1.6
0.0016
Cb medulloblastoma
TAATAAAAAT (
10
)
9.2
0.0092
Cb medulloblastoma
GGGGTGGGGG (
6
)
4.6
0.0046
Cb medulloblastoma
ATGGATGAAA
(
7
)
2.3
0.0023
Cb medulloblastoma
CACATCAATA
(
4
)
2.3
0.0023
P8 GC+1d culture
TAATAAAAAT (
10
)
30.8
0.0308
P8 GC+1d culture
GGGGTGGGGG (
6
)
4.6
0.0046
P8 GC+1d culture
AGGGAGAGGG (
4
)
1.1
0.0011
P8 GC+1d culture
ATGGATGAAA
(
7
)
1.1
0.0011
P8 GC+1d culture
CACATCAATA
(
4
)
1.1
0.0011
P8 GC+1d culture
TAATAAAATT
(
6
)
1.1
0.0011
P8 GC+SHH+1d culture
TAATAAAAAT (
10
)
60.9
0.0609
P8 GC+SHH+1d culture
CACATCAATA
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
GGGGTGGGGG (
6
)
2.3
0.0023
P8 GC+SHH+1d culture
GGAAATCTGA (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TAATAAAATT
(
6
)
1.2
0.0012
3T3 fibroblasts
GGGGTGGGGG (
6
)
31.5
0.0315
E15 cortex
GGGGTGGGGG (
6
)
14.8
0.0148
E15 cortex
ATGGATGAAA
(
7
)
4.9
0.0049
E15 cortex
TAATAAAAAT (
10
)
4.9
0.0049
P1 cortex
GGGGTGGGGG (
6
)
9.1
0.0091
P1 cortex
TAATAAAAAT (
10
)
4.5
0.0045
Hypothalamus
TAATAAAAAT (
10
)
7.2
0.0072
Hypothalamus
GGGGTGGGGG (
6
)
5.4
0.0054
Hypothalamus
TAATAAAATT
(
6
)
1.8
0.0018
E12.5 retina
TAATAAAAAT (
10
)
18.8
0.0188
E12.5 retina
CACATCAATA
(
4
)
3.8
0.0038
E12.5 retina
GGGGTGGGGG (
6
)
3.8
0.0038
E12.5 retina
GGAAATCTGA (
3
)
1.9
0.0019
E14.5 retina
TAATAAAAAT (
10
)
72.9
0.0729
E14.5 retina
CACATCAATA
(
4
)
5.5
0.0055
E14.5 retina
GGGGTGGGGG (
6
)
5.5
0.0055
E16.5 retina
TAATAAAAAT (
10
)
48.9
0.0489
E16.5 retina
CACATCAATA
(
4
)
12.7
0.0127
E16.5 retina
GAAAAAAATA
(
16
)
1.8
0.0018
E16.5 retina
GGGGTGGGGG (
6
)
1.8
0.0018
E18.5 retina
TAATAAAAAT (
10
)
70.9
0.0709
E18.5 retina
GGGGTGGGGG (
6
)
3.6
0.0036
E18.5 retina
CACATCAATA
(
4
)
1.8
0.0018
E18.5 retina
GAAAAAAATA
(
16
)
1.8
0.0018
P0.5 retina
GGGGTGGGGG (
6
)
17.7
0.0177
P0.5 retina
TAATAAAAAT (
10
)
5.9
0.0059
P0.5 retina
AGGGAGAGGG (
4
)
3.9
0.0039
P0.5 retina
CACATCAATA
(
4
)
3.9
0.0039
P0.5 retina
TAATAAAATT
(
6
)
2
0.002
P2.5 retina
TAATAAAAAT (
10
)
49.3
0.0493
P2.5 retina
GGGGTGGGGG (
6
)
8.8
0.0088
P2.5 retina
TAATAAAATT
(
6
)
1.8
0.0018
P4.5 retina
TAATAAAAAT (
10
)
25.8
0.0258
P4.5 retina
GGGGTGGGGG (
6
)
4
0.004
P4.5 retina
AGGGAGAGGG (
4
)
2
0.002
P4.5 retina
CACATCAATA
(
4
)
2
0.002
P4.5 retina
GGAAATCTGA (
3
)
2
0.002
P6.5 retina
TAATAAAAAT (
10
)
41.7
0.0417
P6.5 retina
GGGGTGGGGG (
6
)
10
0.01
P6.5 retina
TAATAAAATT
(
6
)
3.3
0.0033
P10.5 crx- retina
CACATCAATA
(
4
)
5.6
0.0056
P10.5 crx- retina
GGGGTGGGGG (
6
)
5.6
0.0056
P10.5 crx- retina
TAATAAAAAT (
10
)
5.6
0.0056
P10.5 crx- retina
ATGGATGAAA
(
7
)
1.9
0.0019
P10.5 crx+ retina
TAATAAAAAT (
10
)
28.8
0.0288
P10.5 crx+ retina
CACATCAATA
(
4
)
5.8
0.0058
P10.5 crx+ retina
GGGGTGGGGG (
6
)
1.9
0.0019
Adult retinal
TAATAAAAAT (
10
)
14.8
0.0148
Adult retinal
GGGGTGGGGG (
6
)
7.4
0.0074
Adult retinal
CACATCAATA
(
4
)
3.7
0.0037
ONL
TAATAAAAAT (
10
)
59.4
0.0594
ONL
CACATCAATA
(
4
)
7.7
0.0077
ONL
GGAAATCTGA (
3
)
1.9
0.0019
ONL
TAATAAAATT
(
6
)
1.9
0.0019
