Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22718	Xbp1	X-box binding protein 1	11	11 3.0 cM	22433
Gene Ontology	DNA binding | extracellular space | nucleus | regulation of transcription, DNA-dependent
Human Homolog	XBP1[X-box binding protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 159 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATCAAGA (18) 55.5 0.0555 P8 Cb GC GGAACTCTGG (6) 4.9 0.0049 P8 Cb GC CTCCTGAGTG (3) 3.3 0.0033 P8 Cb GC GAGGAGCCCC (3) 3.3 0.0033 P8 Cb GC GAAAGGAAAA (6) 1.6 0.0016 P8 Cb GC TGTAACCAGG 1.6 0.0016 P8 Cb GC TTTTCAATGT (4) 1.6 0.0016 Cb medulloblastoma AAGATCAAGA (18) 13.9 0.0139 Cb medulloblastoma GAGGAGCCCC (3) 9.2 0.0092 Cb medulloblastoma GGAACTCTGG (6) 9.2 0.0092 Cb medulloblastoma TTTACACCAA (3) 4.6 0.0046 Cb medulloblastoma TTTTCAATGT (4) 4.6 0.0046 Cb medulloblastoma GGTTAAATCT 2.3 0.0023 P8 GC+1d culture AAGATCAAGA (18) 24 0.024 P8 GC+1d culture AATGGCCCTT (2) 8 0.008 P8 GC+1d culture GGAACTCTGG (6) 3.4 0.0034 P8 GC+1d culture GACACCAGAA (3) 2.3 0.0023 P8 GC+1d culture TCTTCTCCAC (6) 2.3 0.0023 P8 GC+1d culture GCACCGAACG 1.1 0.0011 P8 GC+1d culture TGGTTTAGGA (2) 1.1 0.0011 P8 GC+1d culture TGTAACCAGG 1.1 0.0011 P8 GC+1d culture TTTTCAATGT (4) 1.1 0.0011 P8 GC+SHH+1d culture AAGATCAAGA (18) 17.6 0.0176 P8 GC+SHH+1d culture AATGGCCCTT (2) 5.9 0.0059 P8 GC+SHH+1d culture GACACCAGAA (3) 3.5 0.0035 P8 GC+SHH+1d culture TCTTCTCCAC (6) 3.5 0.0035 P8 GC+SHH+1d culture CTCCTGAGTG (3) 2.3 0.0023 P8 GC+SHH+1d culture TAATTCCAGC (2) 2.3 0.0023 P8 GC+SHH+1d culture CTAAATGAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGCCCC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCACCGAACG 1.2 0.0012 P8 GC+SHH+1d culture GGAACTCTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture TTTTTCATTG (3) 1.2 0.0012 3T3 fibroblasts AAGATCAAGA (18) 56.1 0.0561 3T3 fibroblasts AAAGCTGGAG (5) 7 0.007 3T3 fibroblasts GGATCATTGA (3) 3.5 0.0035 E15 cortex AAGATCAAGA (18) 94 0.094 E15 cortex GGTTAAATCT 9.9 0.0099 E15 cortex GGAACTCTGG (6) 4.9 0.0049 E15 cortex GGATCATTGA (3) 4.9 0.0049 P1 cortex AAGATCAAGA (18) 63.6 0.0636 P1 cortex AATGGCCCTT (2) 4.5 0.0045 P1 cortex GACTCTGCCA (3) 4.5 0.0045 P1 cortex GCACCGAACG 4.5 0.0045 Hypothalamus GAGGAGCCCC (3) 18.1 0.0181 Hypothalamus GGAACTCTGG (6) 7.2 0.0072 Hypothalamus TCTTCTCCAC (6) 7.2 0.0072 Hypothalamus AAGATCAAGA (18) 5.4 0.0054 Hypothalamus AAAGCTGGAG (5) 1.8 0.0018 Hypothalamus CTAAATGAGA (4) 1.8 0.0018 Hypothalamus GGATCATTGA (3) 1.8 0.0018 Hypothalamus TGAGGGGGGA (3) 1.8 0.0018 E12.5 retina AAGATCAAGA (18) 50.7 0.0507 E12.5 retina GACTCTGCCA (3) 26.3 0.0263 E12.5 retina TGTTCAAATG (7) 5.6 0.0056 E12.5 retina AATGGCCCTT (2) 3.8 0.0038 E12.5 retina GGAACTCTGG (6) 3.8 0.0038 E12.5 retina AAAGCTGGAG (5) 1.9 0.0019 E12.5 retina CTAAATGAGA (4) 1.9 0.0019 E12.5 retina CTCCTGAGTG (3) 1.9 0.0019 E12.5 retina TAATTCCAGC (2) 1.9 0.0019 E12.5 retina TGTAACCAGG 1.9 0.0019 E14.5 retina GACTCTGCCA (3) 27.3 0.0273 E14.5 retina TTTTTCATTG (3) 14.6 0.0146 E14.5 retina AAGATCAAGA (18) 7.3 0.0073 E14.5 retina TGTAACCAGG 5.5 0.0055 E14.5 retina GAGGAGCCCC (3) 3.6 0.0036 E14.5 retina GGAACTCTGG (6) 3.6 0.0036 E14.5 retina TAATTCCAGC (2) 3.6 0.0036 E14.5 retina GAAAGGAAAA (6) 1.8 0.0018 E14.5 retina GGATTCATTG (3) 1.8 0.0018 E14.5 retina TGGTTTAGGA (2) 1.8 0.0018 E14.5 retina TTTTCAATGT (4) 1.8 0.0018 E16.5 retina GACTCTGCCA (3) 36.2 0.0362 E16.5 retina AAGATCAAGA (18) 7.2 0.0072 E16.5 retina GGAACTCTGG (6) 7.2 0.0072 E16.5 retina TGTAACCAGG 7.2 0.0072 E16.5 retina CTCCTGAGTG (3) 3.6 0.0036 E16.5 retina TTTACACCAA (3) 3.6 0.0036 E16.5 retina GAGGAGCCCC (3) 1.8 0.0018 E16.5 retina TAATTCCAGC (2) 1.8 0.0018 E16.5 retina TTTTCAATGT (4) 1.8 0.0018 E16.5 retina TTTTTCATTG (3) 1.8 0.0018 E18.5 retina GACTCTGCCA (3) 20 0.02 E18.5 retina AAGATCAAGA (18) 7.3 0.0073 E18.5 retina GGAACTCTGG (6) 7.3 0.0073 E18.5 retina GAAAGGAAAA (6) 3.6 0.0036 E18.5 retina GACACCAGAA (3) 1.8 0.0018 E18.5 retina GAGGAGCCCC (3) 1.8 0.0018 E18.5 retina TAATTCCAGC (2) 1.8 0.0018 P0.5 retina AAGATCAAGA (18) 27.5 0.0275 P0.5 retina GACTCTGCCA (3) 17.7 0.0177 P0.5 retina GGAACTCTGG (6) 5.9 0.0059 P0.5 retina TGTAACCAGG 3.9 0.0039 P0.5 retina GACACCAGAA (3) 2 0.002 P0.5 retina TCTTCTCCAC (6) 2 0.002 P0.5 retina TTTACACCAA (3) 2 0.002 P2.5 retina GACTCTGCCA (3) 28.2 0.0282 P2.5 retina GGAACTCTGG (6) 10.6 0.0106 P2.5 retina AAGATCAAGA (18) 5.3 0.0053 P2.5 retina CTCCTGAGTG (3) 5.3 0.0053 P2.5 retina TTTACACCAA (3) 3.5 0.0035 P2.5 retina AAAGCTGGAG (5) 1.8 0.0018 P2.5 retina AATGGCCCTT (2) 1.8 0.0018 P2.5 retina GGATTCATTG (3) 1.8 0.0018 P2.5 retina TAATTCCAGC (2) 1.8 0.0018 P2.5 retina TGTAACCAGG 1.8 0.0018 P4.5 retina GACTCTGCCA (3) 19.8 0.0198 P4.5 retina AAGATCAAGA (18) 11.9 0.0119 P4.5 retina GGAACTCTGG (6) 7.9 0.0079 P4.5 retina CTCCTGAGTG (3) 5.9 0.0059 P4.5 retina GACACCAGAA (3) 5.9 0.0059 P4.5 retina TGTAACCAGG 4 0.004 P4.5 retina GGATCATTGA (3) 2 0.002 P4.5 retina TTTTCAATGT (4) 2 0.002 P6.5 retina GGAACTCTGG (6) 11.7 0.0117 P6.5 retina AAGATCAAGA (18) 6.7 0.0067 P6.5 retina GACTCTGCCA (3) 6.7 0.0067 P6.5 retina CTCCTGAGTG (3) 3.3 0.0033 P6.5 retina GGATCATTGA (3) 3.3 0.0033 P6.5 retina TGAGGGGGGA (3) 3.3 0.0033 P6.5 retina TGTAACCAGG 3.3 0.0033 P6.5 retina AAAGCTGGAG (5) 1.7 0.0017 P6.5 retina AATGGCCCTT (2) 1.7 0.0017 P6.5 retina GAGGAGCCCC (3) 1.7 0.0017 P6.5 retina TCTTCTCCAC (6) 1.7 0.0017 P6.5 retina TTTACACCAA (3) 1.7 0.0017 P10.5 crx- retina GGAACTCTGG (6) 5.6 0.0056 P10.5 crx- retina TTTACACCAA (3) 5.6 0.0056 P10.5 crx- retina GGATTCATTG (3) 3.7 0.0037 P10.5 crx- retina TGTAACCAGG 3.7 0.0037 P10.5 crx- retina TTTTCAATGT (4) 3.7 0.0037 P10.5 crx- retina AAGATCAAGA (18) 1.9 0.0019 P10.5 crx- retina AATGGCCCTT (2) 1.9 0.0019 P10.5 crx- retina CTCCTGAGTG (3) 1.9 0.0019 P10.5 crx- retina GAGGAGCCCC (3) 1.9 0.0019 P10.5 crx- retina TTTTTTCAAA (5) 1.9 0.0019 P10.5 crx+ retina AAGATCAAGA (18) 11.5 0.0115 P10.5 crx+ retina GGAACTCTGG (6) 5.8 0.0058 P10.5 crx+ retina GAGGAGCCCC (3) 3.8 0.0038 P10.5 crx+ retina AATGGCCCTT (2) 1.9 0.0019 P10.5 crx+ retina GACTCTGCCA (3) 1.9 0.0019 P10.5 crx+ retina TGTAACCAGG 1.9 0.0019 Adult retinal AAGATCAAGA (18) 3.7 0.0037 Adult retinal TCTTCTCCAC (6) 3.7 0.0037 Adult retinal AAAGCTGGAG (5) 1.9 0.0019 Adult retinal AATGGCCCTT (2) 1.9 0.0019 Adult retinal GAAAGGAAAA (6) 1.9 0.0019 Adult retinal GACTCTGCCA (3) 1.9 0.0019 Adult retinal GGAACTCTGG (6) 1.9 0.0019 Adult retinal GGATTCATTG (3) 1.9 0.0019 Adult retinal TTTTTCATTG (3) 1.9 0.0019 Adult retinal TTTTTTCAAA (5) 1.9 0.0019 ONL AAGATCAAGA (18) 5.7 0.0057 ONL TTTTTCATTG (3) 3.8 0.0038 ONL CTCCTGAGTG (3) 1.9 0.0019 ONL GAGGAGCCCC (3) 1.9 0.0019 ONL GGAACTCTGG (6) 1.9 0.0019 ONL TGGTTTAGGA (2) 1.9 0.0019