Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.227583	D5Wsu150e	DNA segment, Chr 5, Wayne State University 150, expressed	5	5 65.0 cM	28023
Mm.227583	9530097L16Rik	RIKEN cDNA 9530097L16 gene	5		319250
Mm.227583	Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	5		11938
Gene Ontology	ATP binding | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | calcium ion binding | calcium ion transport | calcium-transporting ATPase activity | catalytic activity | cation transport | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | integral to membrane | magnesium ion binding | membrane | metabolism | microsome | regulation of muscle contraction | sarcoplasmic reticulum
Human Homolog	ATP2A2[ATPase, Ca++ transporting, cardiac muscle, slow twitch 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 163 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC CTTAAATCTG (4) 19.6 0.0196 P8 Cb GC ATTTCAGGTA (3) 4.9 0.0049 P8 Cb GC GTGGTGGTGG (7) 4.9 0.0049 P8 Cb GC AACATATTGG (4) 3.3 0.0033 P8 Cb GC GCTAAACTGC (5) 3.3 0.0033 P8 Cb GC GTGGCTCCTG (4) 3.3 0.0033 P8 Cb GC ATTCTCTGGA (3) 1.6 0.0016 P8 Cb GC ATTTCAGTTT (6) 1.6 0.0016 P8 Cb GC CTGTTCAGTG (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma ATTTCAGGTA (3) 60.1 0.0601 Cb medulloblastoma CTTAAATCTG (4) 4.6 0.0046 Cb medulloblastoma CTTTTTCATC (5) 4.6 0.0046 Cb medulloblastoma TACAGTGTTC (5) 4.6 0.0046 Cb medulloblastoma CTTTCTAATG (4) 2.3 0.0023 Cb medulloblastoma GCTAAACTGC (5) 2.3 0.0023 Cb medulloblastoma GTGGTGGTGG (7) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture CTTAAATCTG (4) 13.7 0.0137 P8 GC+1d culture ATTTCAGGTA (3) 11.4 0.0114 P8 GC+1d culture ATTCTCTGGA (3) 4.6 0.0046 P8 GC+1d culture AACATATTGG (4) 1.1 0.0011 P8 GC+1d culture AACCATATTG (4) 1.1 0.0011 P8 GC+1d culture CTTTCTAATG (4) 1.1 0.0011 P8 GC+1d culture CTTTTTAATG (4) 1.1 0.0011 P8 GC+1d culture GCTAAACTGC (5) 1.1 0.0011 P8 GC+1d culture GTTTTGAAAA (5) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture ATTTCAGGTA (3) 12.9 0.0129 P8 GC+SHH+1d culture CTTAAATCTG (4) 11.7 0.0117 P8 GC+SHH+1d culture ATTCTCTGGA (3) 4.7 0.0047 P8 GC+SHH+1d culture AACATATTGG (4) 3.5 0.0035 P8 GC+SHH+1d culture GCTAAACTGC (5) 2.3 0.0023 P8 GC+SHH+1d culture CGCTGTGAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture CTTTCTAATG (4) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts CTTAAATCTG (4) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex ATTCTCTGGA (3) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex CTTAAATCTG (4) 13.6 0.0136 P1 cortex ATTTCAGGTA (3) 9.1 0.0091 P1 cortex CTGTTCAGTG (4) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus ATTTCAGGTA (3) 27.2 0.0272 Hypothalamus CTTAAATCTG (4) 10.9 0.0109 Hypothalamus CGCTGTGAGA (4) 1.8 0.0018 Hypothalamus CTTTTTCATC (5) 1.8 0.0018 Hypothalamus GTGGTGGTGG (7) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina CTTAAATCTG (4) 11.3 0.0113 E12.5 retina ATTTCAGGTA (3) 9.4 0.0094 E12.5 retina CAAAGACAAA (4) 5.6 0.0056 E12.5 retina CTTTTTCATC (5) 3.8 0.0038 E12.5 retina AACATATTGG (4) 1.9 0.0019 E12.5 retina ATTCTCTGGA (3) 1.9 0.0019 E12.5 retina CTGTTCAGTG (4) 1.9 0.0019 E12.5 retina GTGGTGGTGG (7) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina CTTAAATCTG (4) 12.8 0.0128 E14.5 retina ATTTCAGTTT (6) 9.1 0.0091 E14.5 retina ATTTCAGGTA (3) 3.6 0.0036 E14.5 retina AACATATTGG (4) 1.8 0.0018 E14.5 retina GTTTTGAAAA (5) 1.8 0.0018 E14.5 retina TATTGTTTTT (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina CTTAAATCTG (4) 12.7 0.0127 E16.5 retina ATTTCAGGTA (3) 7.2 0.0072 E16.5 retina ATTCTCTGGA (3) 3.6 0.0036 E16.5 retina CTTTCTAATG (4) 1.8 0.0018 E16.5 retina CTTTTTCATC (5) 1.8 0.0018 E16.5 retina GTGGTGGTGG (7) 1.8 0.0018 E16.5 retina TACAGTGTTC (5) 1.8 0.0018 E16.5 retina TTTGACTGTA (7) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina CTTAAATCTG (4) 21.8 0.0218 E18.5 retina ATTTCAGGTA (3) 7.3 0.0073 E18.5 retina AACATATTGG (4) 1.8 0.0018 E18.5 retina CAAAGACAAA (4) 1.8 0.0018 E18.5 retina CTTTTTCATC (5) 1.8 0.0018 E18.5 retina TACAGTGTTC (5) 1.8 0.0018 E18.5 retina TATTGTTTTT (4) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina CTTAAATCTG (4) 13.7 0.0137 P0.5 retina ATTCTCTGGA (3) 7.9 0.0079 P0.5 retina ATTTCAGGTA (3) 5.9 0.0059 P0.5 retina CTGTTCAGTG (4) 2 0.002 P0.5 retina CTTTTTCATC (5) 2 0.002 P0.5 retina GCTAAACTGC (5) 2 0.002 P0.5 retina TATTGTTTTT (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina CTTAAATCTG (4) 17.6 0.0176 P2.5 retina ATTTCAGGTA (3) 8.8 0.0088 P2.5 retina CTTTCTAATG (4) 5.3 0.0053 P2.5 retina GTTTTGAAAA (5) 1.8 0.0018 P2.5 retina TTTCAATGTC (5) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina ATTTCAGGTA (3) 11.9 0.0119 P4.5 retina CTTAAATCTG (4) 11.9 0.0119 P4.5 retina CAAAGACAAA (4) 4 0.004 P4.5 retina ATTCTCTGGA (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina CTTAAATCTG (4) 13.3 0.0133 P6.5 retina ATTTCAGGTA (3) 10 0.01 P6.5 retina CAAAGACAAA (4) 3.3 0.0033 P6.5 retina AACATATTGG (4) 1.7 0.0017 P6.5 retina CTGTTCAGTG (4) 1.7 0.0017 P6.5 retina CTTTTTCATC (5) 1.7 0.0017 P6.5 retina GTGGCTCCTG (4) 1.7 0.0017 P6.5 retina GTGGTGGTGG (7) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina CTTAAATCTG (4) 14.9 0.0149 P10.5 crx- retina ATTTCAGGTA (3) 11.1 0.0111 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina GTGGTGGTGG (7) 3.7 0.0037 P10.5 crx- retina CTTTCTAATG (4) 1.9 0.0019 P10.5 crx- retina TTTGACTGTA (7) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina ATTTCAGGTA (3) 11.5 0.0115 P10.5 crx+ retina CTTAAATCTG (4) 11.5 0.0115 P10.5 crx+ retina CGCTGTGAGA (4) 1.9 0.0019 P10.5 crx+ retina CTTTCTAATG (4) 1.9 0.0019 P10.5 crx+ retina GCTAAACTGC (5) 1.9 0.0019 P10.5 crx+ retina GTGGTGGTGG (7) 1.9 0.0019 P10.5 crx+ retina GTTTTGAAAA (5) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal CTTAAATCTG (4) 11.1 0.0111 Adult retinal ATTTCAGGTA (3) 3.7 0.0037 Adult retinal CTGTTCAGTG (4) 3.7 0.0037 Adult retinal GCTAAACTGC (5) 3.7 0.0037 Adult retinal AACATATTGG (4) 1.9 0.0019 Adult retinal ATTCTCTGGA (3) 1.9 0.0019 Adult retinal CTTTCTAATG (4) 1.9 0.0019 Adult retinal CTTTTTAATG (4) 1.9 0.0019 Adult retinal GTGGCTCCTG (4) 1.9 0.0019 Adult retinal GTGGTGGTGG (7) 1.9 0.0019 Adult retinal TTTGACTGTA (7) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL ATTTCAGGTA (3) 19.2 0.0192 ONL CTGTTCAGTG (4) 3.8 0.0038 ONL GTGGTGGTGG (7) 3.8 0.0038 ONL CTTAAATCTG (4) 1.9 0.0019 ONL CTTTCTAATG (4) 1.9 0.0019