Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.229308
2010003O18Rik
RIKEN cDNA 2010003O18 gene
5
384281
Gene Ontology
mRNA splice site selection
|
RNA binding
|
spliceosome complex
|
transferase activity
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 102 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGCTGCTCTG
(
7
)
22.8
0.0228
P8 Cb GC
TGGGTGCTGG (
64
)
8.2
0.0082
P8 Cb GC
AAGATGCAGC
(
4
)
6.5
0.0065
P8 Cb GC
CTTTTAATCC (
33
)
3.3
0.0033
P8 Cb GC
GCAAACAAAA (
8
)
3.3
0.0033
P8 Cb GC
GCTGGCTGGC (
10
)
1.6
0.0016
Cb medulloblastoma
TGGGTGCTGG (
64
)
9.2
0.0092
Cb medulloblastoma
TAAATAAAAA
(
6
)
6.9
0.0069
Cb medulloblastoma
AAGATGCAGC
(
4
)
2.3
0.0023
Cb medulloblastoma
GCAAACAAAA (
8
)
2.3
0.0023
Cb medulloblastoma
GGCTGCTCTG
(
7
)
2.3
0.0023
Cb medulloblastoma
GTGGACTCAC
(
2
)
2.3
0.0023
P8 GC+1d culture
GGCTGCTCTG
(
7
)
11.4
0.0114
P8 GC+1d culture
TAAATAAAAA
(
6
)
5.7
0.0057
P8 GC+1d culture
TGGGTGCTGG (
64
)
5.7
0.0057
P8 GC+1d culture
AAGATGCAGC
(
4
)
3.4
0.0034
P8 GC+1d culture
CTTTTAATCC (
33
)
1.1
0.0011
P8 GC+1d culture
GCTGGCTGGC (
10
)
1.1
0.0011
P8 GC+1d culture
GGTCACCTTG (
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GGCTGCTCTG
(
7
)
18.7
0.0187
P8 GC+SHH+1d culture
AAGATGCAGC
(
4
)
5.9
0.0059
P8 GC+SHH+1d culture
TAAATAAAAA
(
6
)
4.7
0.0047
P8 GC+SHH+1d culture
TGGGTGCTGG (
64
)
3.5
0.0035
P8 GC+SHH+1d culture
CTTTTAATCC (
33
)
1.2
0.0012
P8 GC+SHH+1d culture
GCAAACAAAA (
8
)
1.2
0.0012
P8 GC+SHH+1d culture
GCTGGCTGGC (
10
)
1.2
0.0012
3T3 fibroblasts
GGCTGCTCTG
(
7
)
35
0.035
3T3 fibroblasts
TGGGTGCTGG (
64
)
17.5
0.0175
3T3 fibroblasts
GCTGGCTGGC (
10
)
3.5
0.0035
E15 cortex
GGCTGCTCTG
(
7
)
49.5
0.0495
E15 cortex
TGGGTGCTGG (
64
)
14.8
0.0148
P1 cortex
TGGGTGCTGG (
64
)
13.6
0.0136
P1 cortex
CTTTTAATCC (
33
)
4.5
0.0045
P1 cortex
GCTGGCTGGC (
10
)
4.5
0.0045
P1 cortex
GTGGACTCAC
(
2
)
4.5
0.0045
P1 cortex
TAAATAAAAA
(
6
)
4.5
0.0045
Hypothalamus
TGGGTGCTGG (
64
)
9.1
0.0091
Hypothalamus
GGCTGCTCTG
(
7
)
7.2
0.0072
Hypothalamus
TAAATAAAAA
(
6
)
3.6
0.0036
E12.5 retina
GGCTGCTCTG
(
7
)
30
0.03
E12.5 retina
TGGGTGCTGG (
64
)
9.4
0.0094
E12.5 retina
AAGATGCAGC
(
4
)
7.5
0.0075
E12.5 retina
TAAATAAAAA
(
6
)
3.8
0.0038
E12.5 retina
CTTTTAATCC (
33
)
1.9
0.0019
E14.5 retina
TGGGTGCTGG (
64
)
54.7
0.0547
E14.5 retina
GGCTGCTCTG
(
7
)
51
0.051
E14.5 retina
AAGATGCAGC
(
4
)
9.1
0.0091
E14.5 retina
TAAATAAAAA
(
6
)
3.6
0.0036
E14.5 retina
CTTTTAATCC (
33
)
1.8
0.0018
E14.5 retina
GCTGGCTGGC (
10
)
1.8
0.0018
E16.5 retina
GGCTGCTCTG
(
7
)
41.7
0.0417
E16.5 retina
TGGGTGCTGG (
64
)
41.7
0.0417
E16.5 retina
CTTTTAATCC (
33
)
7.2
0.0072
E16.5 retina
AAGATGCAGC
(
4
)
5.4
0.0054
E16.5 retina
GGTCACCTTG (
3
)
1.8
0.0018
E18.5 retina
GGCTGCTCTG
(
7
)
23.6
0.0236
E18.5 retina
TGGGTGCTGG (
64
)
20
0.02
E18.5 retina
AAGATGCAGC
(
4
)
9.1
0.0091
E18.5 retina
TAAATAAAAA
(
6
)
5.5
0.0055
E18.5 retina
GTGGACTCAC
(
2
)
1.8
0.0018
P0.5 retina
GGCTGCTCTG
(
7
)
21.6
0.0216
P0.5 retina
TGGGTGCTGG (
64
)
11.8
0.0118
P0.5 retina
AAGATGCAGC
(
4
)
3.9
0.0039
P0.5 retina
GCTGGCTGGC (
10
)
2
0.002
P2.5 retina
GGCTGCTCTG
(
7
)
21.1
0.0211
P2.5 retina
TGGGTGCTGG (
64
)
17.6
0.0176
P2.5 retina
TAAATAAAAA
(
6
)
8.8
0.0088
P2.5 retina
GCAAACAAAA (
8
)
1.8
0.0018
P2.5 retina
GTGGACTCAC
(
2
)
1.8
0.0018
P4.5 retina
GGCTGCTCTG
(
7
)
23.8
0.0238
P4.5 retina
TGGGTGCTGG (
64
)
9.9
0.0099
P4.5 retina
AAGATGCAGC
(
4
)
4
0.004
P4.5 retina
GCAAACAAAA (
8
)
4
0.004
P4.5 retina
TAAATAAAAA
(
6
)
4
0.004
P4.5 retina
GTGGACTCAC
(
2
)
2
0.002
P6.5 retina
GGCTGCTCTG
(
7
)
30
0.03
P6.5 retina
TGGGTGCTGG (
64
)
13.3
0.0133
P6.5 retina
AAGATGCAGC
(
4
)
5
0.005
P6.5 retina
TAAATAAAAA
(
6
)
5
0.005
P10.5 crx- retina
TGGGTGCTGG (
64
)
20.4
0.0204
P10.5 crx- retina
GGCTGCTCTG
(
7
)
11.1
0.0111
P10.5 crx- retina
AAGATGCAGC
(
4
)
7.4
0.0074
P10.5 crx- retina
CTTTTAATCC (
33
)
3.7
0.0037
P10.5 crx- retina
TAAATAAAAA
(
6
)
1.9
0.0019
P10.5 crx+ retina
GGCTGCTCTG
(
7
)
25
0.025
P10.5 crx+ retina
TGGGTGCTGG (
64
)
15.4
0.0154
P10.5 crx+ retina
GCTGGCTGGC (
10
)
3.8
0.0038
P10.5 crx+ retina
AAGATGCAGC
(
4
)
1.9
0.0019
P10.5 crx+ retina
GTGGACTCAC
(
2
)
1.9
0.0019
P10.5 crx+ retina
TAAATAAAAA
(
6
)
1.9
0.0019
Adult retinal
TGGGTGCTGG (
64
)
13
0.013
Adult retinal
GGCTGCTCTG
(
7
)
11.1
0.0111
Adult retinal
CTTTTAATCC (
33
)
3.7
0.0037
Adult retinal
AAGATGCAGC
(
4
)
1.9
0.0019
Adult retinal
GTGGACTCAC
(
2
)
1.9
0.0019
Adult retinal
TAAATAAAAA
(
6
)
1.9
0.0019
ONL
TGGGTGCTGG (
64
)
40.2
0.0402
ONL
GGCTGCTCTG
(
7
)
7.7
0.0077
ONL
CTTTTAATCC (
33
)
5.7
0.0057
ONL
AAGATGCAGC
(
4
)
1.9
0.0019
ONL
GTGGACTCAC
(
2
)
1.9
0.0019
ONL
TAAATAAAAA
(
6
)
1.9
0.0019
