Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.233067
BC024683
cDNA sequence BC024683
3
229512
Mm.233067
BC038331
cDNA sequence BC038331
408056
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 80 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
CACTGAGTGT
(
3
)
21.2
0.0212
P8 Cb GC
TAGGAGGCAG
(
3
)
3.3
0.0033
P8 Cb GC
CAGACTCAAG
(
5
)
1.6
0.0016
P8 Cb GC
GCATCCAGCT (
6
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CACTGAGTGT
(
3
)
20.8
0.0208
Cb medulloblastoma
TAGGAGGCAG
(
3
)
6.9
0.0069
Cb medulloblastoma
CAGACTCAAG
(
5
)
2.3
0.0023
Cb medulloblastoma
CTGGGATTAA (
3
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CACTGAGTGT
(
3
)
20.5
0.0205
P8 GC+1d culture
AATACTCAGG
(
6
)
4.6
0.0046
P8 GC+1d culture
GCATCCAGCT (
6
)
2.3
0.0023
P8 GC+1d culture
TAGGAGGCAG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CACTGAGTGT
(
3
)
19.9
0.0199
P8 GC+SHH+1d culture
GCATCCAGCT (
6
)
4.7
0.0047
P8 GC+SHH+1d culture
AATACTCAGG
(
6
)
2.3
0.0023
P8 GC+SHH+1d culture
TAGGAGGCAG
(
3
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
CACTGAGTGT
(
3
)
7
0.007
3T3 fibroblasts
GCATCCAGCT (
6
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GCATCCAGCT (
6
)
14.8
0.0148
E15 cortex
CAGACTCAAG
(
5
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
CACTGAGTGT
(
3
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
CACTGAGTGT
(
3
)
14.5
0.0145
Hypothalamus
TAGGAGGCAG
(
3
)
5.4
0.0054
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CACTGAGTGT
(
3
)
28.2
0.0282
E12.5 retina
AATACTCAGG
(
6
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
CACTGAGTGT
(
3
)
9.1
0.0091
E14.5 retina
GCATCCAGCT (
6
)
3.6
0.0036
E14.5 retina
TAGGAGGCAG
(
3
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CACTGAGTGT
(
3
)
9.1
0.0091
E16.5 retina
GCATCCAGCT (
6
)
3.6
0.0036
E16.5 retina
AATACTCAGG
(
6
)
1.8
0.0018
E16.5 retina
TAGGAGGCAG
(
3
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
CACTGAGTGT
(
3
)
20
0.02
E18.5 retina
CTGGGATTAA (
3
)
3.6
0.0036
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
CACTGAGTGT
(
3
)
49.1
0.0491
P0.5 retina
AATACTCAGG
(
6
)
3.9
0.0039
P0.5 retina
GCATCCAGCT (
6
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CACTGAGTGT
(
3
)
38.7
0.0387
P2.5 retina
GCATCCAGCT (
6
)
3.5
0.0035
P2.5 retina
CTGGGATTAA (
3
)
1.8
0.0018
P4.5 retina
CACTGAGTGT
(
3
)
43.6
0.0436
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TAGGAGGCAG
(
3
)
4
0.004
P4.5 retina
AATACTCAGG
(
6
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CACTGAGTGT
(
3
)
50
0.05
P6.5 retina
TAGGAGGCAG
(
3
)
3.3
0.0033
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
CACTGAGTGT
(
3
)
46.4
0.0464
P10.5 crx- retina
AATACTCAGG
(
6
)
3.7
0.0037
P10.5 crx- retina
TAGGAGGCAG
(
3
)
3.7
0.0037
P10.5 crx- retina
GCATCCAGCT (
6
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
CACTGAGTGT
(
3
)
34.6
0.0346
P10.5 crx+ retina
CTGGGATTAA (
3
)
1.9
0.0019
P10.5 crx+ retina
GCATCCAGCT (
6
)
1.9
0.0019
P10.5 crx+ retina
TAGGAGGCAG
(
3
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CACTGAGTGT
(
3
)
14.8
0.0148
Adult retinal
AATACTCAGG
(
6
)
7.4
0.0074
Adult retinal
GCATCCAGCT (
6
)
5.6
0.0056
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CACTGAGTGT
(
3
)
19.2
0.0192
ONL
TAGGAGGCAG
(
3
)
3.8
0.0038
ONL
AATACTCAGG
(
6
)
1.9
0.0019
ONL
GCATCCAGCT (
6
)
1.9
0.0019
