Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.233846	Syt4	synaptotagmin 4	18	18 10.0 cM	20983
Gene Ontology	calcium ion binding | integral to membrane | membrane | synapse | synaptic vesicle | transport | transporter activity
Human Homolog	SYT4[synaptotagmin IV]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATAAACTGC (3) 1.6 0.0016 P8 Cb GC CAGAGGCCGC (5) 1.6 0.0016 P8 Cb GC GCTACTTAAG (2) 1.6 0.0016 P8 Cb GC TTGAATACAG 1.6 0.0016 P8 Cb GC TTTCTTCAGG (3) 1.6 0.0016 Cb medulloblastoma AATAAACTGC (3) 50.9 0.0509 Cb medulloblastoma GCTACTTAAG (2) 9.2 0.0092 Cb medulloblastoma GAACCTGTGG 2.3 0.0023 Cb medulloblastoma GTAACCTCCC (3) 2.3 0.0023 P8 GC+1d culture CAGAGGCCGC (5) 5.7 0.0057 P8 GC+1d culture TGGAATACAG 1.1 0.0011 P8 GC+1d culture TTTCTTCAGG (3) 1.1 0.0011 P8 GC+SHH+1d culture CAGAGGCCGC (5) 5.9 0.0059 P8 GC+SHH+1d culture AATAAACTGC (3) 2.3 0.0023 P8 GC+SHH+1d culture GTCTTGAATT (3) 2.3 0.0023 P8 GC+SHH+1d culture GTAACCTCCC (3) 1.2 0.0012 3T3 fibroblasts CAGAGGCCGC (5) 3.5 0.0035 E15 cortex GAACCTGTGG 29.7 0.0297 E15 cortex CAGAGGCCGC (5) 14.8 0.0148 E15 cortex AATAAACTGC (3) 4.9 0.0049 E15 cortex TGATGGAACA 4.9 0.0049 P1 cortex AATAAACTGC (3) 13.6 0.0136 P1 cortex GAACCTGTGG 9.1 0.0091 P1 cortex CAGAGGCCGC (5) 4.5 0.0045 P1 cortex TTGAATACAG 4.5 0.0045 Hypothalamus AATAAACTGC (3) 12.7 0.0127 Hypothalamus GCTACTTAAG (2) 10.9 0.0109 Hypothalamus TGATGGAACA 3.6 0.0036 Hypothalamus TTTCTTCAGG (3) 3.6 0.0036 Hypothalamus GAACCTGTGG 1.8 0.0018 E12.5 retina CAGAGGCCGC (5) 9.4 0.0094 E12.5 retina AATAAACTGC (3) 3.8 0.0038 E12.5 retina GCTACTTAAG (2) 1.9 0.0019 E14.5 retina GCTACTTAAG (2) 9.1 0.0091 E14.5 retina CAGAGGCCGC (5) 7.3 0.0073 E14.5 retina AATAAACTGC (3) 5.5 0.0055 E14.5 retina GAACCTGTGG 1.8 0.0018 E14.5 retina TGATGGAACA 1.8 0.0018 E16.5 retina AATAAACTGC (3) 9.1 0.0091 E16.5 retina CAGAGGCCGC (5) 9.1 0.0091 E16.5 retina GCTACTTAAG (2) 3.6 0.0036 E16.5 retina GAACCTGTGG 1.8 0.0018 E18.5 retina AATAAACTGC (3) 16.4 0.0164 E18.5 retina GCTACTTAAG (2) 5.5 0.0055 E18.5 retina CAGAGGCCGC (5) 1.8 0.0018 E18.5 retina TTTCTTCAGG (3) 1.8 0.0018 P0.5 retina AATAAACTGC (3) 7.9 0.0079 P0.5 retina GAACCTGTGG 2 0.002 P2.5 retina CAGAGGCCGC (5) 7 0.007 P2.5 retina AATAAACTGC (3) 5.3 0.0053 P2.5 retina GCTACTTAAG (2) 1.8 0.0018 P4.5 retina CAGAGGCCGC (5) 7.9 0.0079 P4.5 retina AATAAACTGC (3) 4 0.004 P4.5 retina GCTACTTAAG (2) 4 0.004 P4.5 retina GAACCTGTGG 2 0.002 P4.5 retina TTTCTTCAGG (3) 2 0.002 P6.5 retina GCTACTTAAG (2) 8.3 0.0083 P6.5 retina AATAAACTGC (3) 5 0.005 P6.5 retina CAGAGGCCGC (5) 3.3 0.0033 P6.5 retina TGGAATACAG 1.7 0.0017 P10.5 crx- retina CAGAGGCCGC (5) 11.1 0.0111 P10.5 crx- retina AATAAACTGC (3) 3.7 0.0037 P10.5 crx- retina GAACCTGTGG 1.9 0.0019 P10.5 crx+ retina AATAAACTGC (3) 9.6 0.0096 P10.5 crx+ retina CAGAGGCCGC (5) 7.7 0.0077 P10.5 crx+ retina GAACCTGTGG 1.9 0.0019 P10.5 crx+ retina GTAACCTCCC (3) 1.9 0.0019 P10.5 crx+ retina TTGAATACAG 1.9 0.0019 P10.5 crx+ retina TTTCTTCAGG (3) 1.9 0.0019 Adult retinal GCTACTTAAG (2) 5.6 0.0056 Adult retinal CAGAGGCCGC (5) 3.7 0.0037 ONL AATAAACTGC (3) 1.9 0.0019 ONL CAGAGGCCGC (5) 1.9 0.0019 ONL TGGAATACAG 1.9 0.0019 ONL TTGAATACAG 1.9 0.0019