Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234266	4833414L08Rik	RIKEN cDNA 4833414L08 gene	15		74599
Mm.234266	Sdc2	syndecan 2	15	15 12.4 cM	15529
Gene Ontology	cytoskeletal protein binding | integral to membrane | membrane
Human Homolog	SDC2[syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTTGAGAC (3) 4.9 0.0049 P8 Cb GC CGGAAGAAAG (2) 1.6 0.0016 P8 Cb GC GAATTGATTT (4) 1.6 0.0016 P8 Cb GC GCGGGGGGGG (18) 1.6 0.0016 P8 Cb GC TTAAAAGGAA (8) 1.6 0.0016 Cb medulloblastoma CCGAAAGTAA (2) 9.2 0.0092 Cb medulloblastoma GCCTAAAAAA (7) 2.3 0.0023 Cb medulloblastoma GCGGGGGGGG (18) 2.3 0.0023 Cb medulloblastoma TAAAAAAATA (5) 2.3 0.0023 P8 GC+1d culture CATTTAAAAT (4) 2.3 0.0023 P8 GC+1d culture CCGAAAGTAA (2) 2.3 0.0023 P8 GC+1d culture ATGTTGAGAC (3) 1.1 0.0011 P8 GC+1d culture CGGAAGAAAG (2) 1.1 0.0011 P8 GC+1d culture GCCTAATATT (2) 1.1 0.0011 P8 GC+1d culture GTTTGGGGAT (2) 1.1 0.0011 P8 GC+1d culture TTAAAAGGAA (8) 1.1 0.0011 P8 GC+SHH+1d culture ATGTTGAGAC (3) 4.7 0.0047 P8 GC+SHH+1d culture CATTTAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture GAATTGATTT (4) 1.2 0.0012 3T3 fibroblasts CCGAAAGTAA (2) 7 0.007 P1 cortex ATGTTGAGAC (3) 9.1 0.0091 P1 cortex TTAAAAGGAA (8) 4.5 0.0045 Hypothalamus CCGAAAGTAA (2) 7.2 0.0072 Hypothalamus ATGTTGAGAC (3) 5.4 0.0054 Hypothalamus CGGAAGAAAG (2) 1.8 0.0018 Hypothalamus GCCTAATATT (2) 1.8 0.0018 E12.5 retina ATGTTGAGAC (3) 11.3 0.0113 E12.5 retina CATTTAAAAT (4) 1.9 0.0019 E12.5 retina CCGAAAGTAA (2) 1.9 0.0019 E12.5 retina GCCTAAAAAA (7) 1.9 0.0019 E12.5 retina GCGGGGGGGG (18) 1.9 0.0019 E14.5 retina ATGTTGAGAC (3) 12.8 0.0128 E14.5 retina CCGAAAGTAA (2) 1.8 0.0018 E14.5 retina TTAAAAGGAA (8) 1.8 0.0018 E16.5 retina ATGTTGAGAC (3) 14.5 0.0145 E16.5 retina GCCTAATATT (2) 1.8 0.0018 E16.5 retina TTAAAAGGAA (8) 1.8 0.0018 E18.5 retina ATGTTGAGAC (3) 9.1 0.0091 E18.5 retina CCGAAAGTAA (2) 5.5 0.0055 E18.5 retina GCCTAAAAAA (7) 3.6 0.0036 E18.5 retina GTTTGGGGAT (2) 3.6 0.0036 E18.5 retina GCCTAATATT (2) 1.8 0.0018 P0.5 retina ATGTTGAGAC (3) 9.8 0.0098 P0.5 retina CCGAAAGTAA (2) 2 0.002 P0.5 retina GCCTAATATT (2) 2 0.002 P0.5 retina TAAAAAAATA (5) 2 0.002 P2.5 retina ATGTTGAGAC (3) 3.5 0.0035 P2.5 retina CCGAAAGTAA (2) 3.5 0.0035 P2.5 retina TAAAAAAATA (5) 1.8 0.0018 P4.5 retina ATGTTGAGAC (3) 5.9 0.0059 P4.5 retina CCGAAAGTAA (2) 2 0.002 P4.5 retina CGGAAGAAAG (2) 2 0.002 P4.5 retina TAAAAAAATA (5) 2 0.002 P6.5 retina ATGTTGAGAC (3) 6.7 0.0067 P6.5 retina GCCTAATATT (2) 3.3 0.0033 P6.5 retina GAATTGATTT (4) 1.7 0.0017 P6.5 retina GCGGGGGGGG (18) 1.7 0.0017 P6.5 retina GTTTGGGGAT (2) 1.7 0.0017 P6.5 retina TAAAAAAATA (5) 1.7 0.0017 P10.5 crx- retina ATGTTGAGAC (3) 5.6 0.0056 P10.5 crx- retina CATTTAAAAT (4) 3.7 0.0037 P10.5 crx+ retina ATGTTGAGAC (3) 5.8 0.0058 P10.5 crx+ retina GCGGGGGGGG (18) 1.9 0.0019 P10.5 crx+ retina GTTTGGGGAT (2) 1.9 0.0019 P10.5 crx+ retina TTAAAAGGAA (8) 1.9 0.0019 Adult retinal ATGTTGAGAC (3) 3.7 0.0037 Adult retinal CGGAAGAAAG (2) 1.9 0.0019 Adult retinal TAAAAAAATA (5) 1.9 0.0019 ONL ATGTTGAGAC (3) 3.8 0.0038 ONL CCGAAAGTAA (2) 1.9 0.0019 ONL GAATTGATTT (4) 1.9 0.0019 ONL TTAAAAGGAA (8) 1.9 0.0019