Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234923	D6Mgi11	DNA Segment, Chr 6, Mouse Genome Informatics 11	6		101422
Mm.234923	D430030G11Rik	RIKEN cDNA D430030G11 gene	19		320665
Mm.234923	Pacs1	phosphofurin acidic cluster sorting protein 1	19		107975
Gene Ontology	COPI-coated vesicle | Golgi apparatus | protein-Golgi targeting
Human Homolog	PACS1[phosphofurin acidic cluster sorting protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGGGTTTTT (9) 8.2 0.0082 P8 Cb GC GCAGAAGTGA (5) 3.3 0.0033 Cb medulloblastoma GCAGAAGTGA (5) 9.2 0.0092 Cb medulloblastoma AATCACAAGC (4) 4.6 0.0046 Cb medulloblastoma TTGGGTTTTT (9) 2.3 0.0023 P8 GC+1d culture GCAGAAGTGA (5) 11.4 0.0114 P8 GC+1d culture TTGGGTTTTT (9) 4.6 0.0046 P8 GC+1d culture GGCAGGGACT (3) 2.3 0.0023 P8 GC+SHH+1d culture GCAGAAGTGA (5) 5.9 0.0059 P8 GC+SHH+1d culture TTGGGTTTTT (9) 3.5 0.0035 P8 GC+SHH+1d culture AATCACAAGC (4) 1.2 0.0012 P8 GC+SHH+1d culture AGGATCAGTC (3) 1.2 0.0012 3T3 fibroblasts GCAGAAGTGA (5) 31.5 0.0315 3T3 fibroblasts TTGGGTTTTT (9) 3.5 0.0035 E15 cortex GCAGAAGTGA (5) 9.9 0.0099 E15 cortex TTGGGTTTTT (9) 4.9 0.0049 P1 cortex TTGGGTTTTT (9) 4.5 0.0045 Hypothalamus GCAGAAGTGA (5) 7.2 0.0072 Hypothalamus AATCACAAGC (4) 1.8 0.0018 Hypothalamus AGGATCAGTC (3) 1.8 0.0018 Hypothalamus CAGATTTCTG (4) 1.8 0.0018 E12.5 retina AATCACAAGC (4) 5.6 0.0056 E12.5 retina AGGATCAGTC (3) 5.6 0.0056 E12.5 retina TTGGGTTTTT (9) 3.8 0.0038 E12.5 retina GCAGAAGTGA (5) 1.9 0.0019 E14.5 retina TTGGGTTTTT (9) 7.3 0.0073 E14.5 retina GCAGAAGTGA (5) 3.6 0.0036 E16.5 retina GCAGAAGTGA (5) 10.9 0.0109 E16.5 retina TTGGGTTTTT (9) 5.4 0.0054 E16.5 retina AGGATCAGTC (3) 3.6 0.0036 E18.5 retina GCAGAAGTGA (5) 5.5 0.0055 E18.5 retina TTGGGTTTTT (9) 5.5 0.0055 P0.5 retina GCAGAAGTGA (5) 9.8 0.0098 P2.5 retina GCAGAAGTGA (5) 3.5 0.0035 P2.5 retina TTGGGTTTTT (9) 3.5 0.0035 P2.5 retina AATCACAAGC (4) 1.8 0.0018 P2.5 retina GGCAGGGACT (3) 1.8 0.0018 P4.5 retina TTGGGTTTTT (9) 7.9 0.0079 P6.5 retina GCAGAAGTGA (5) 5 0.005 P6.5 retina TTGGGTTTTT (9) 5 0.005 P6.5 retina CAGATTTCTG (4) 3.3 0.0033 P6.5 retina GGCAGGGACT (3) 3.3 0.0033 P6.5 retina AATCACAAGC (4) 1.7 0.0017 P6.5 retina AGGATCAGTC (3) 1.7 0.0017 P10.5 crx- retina GCAGAAGTGA (5) 18.6 0.0186 P10.5 crx- retina TTGGGTTTTT (9) 9.3 0.0093 P10.5 crx- retina AATCACAAGC (4) 1.9 0.0019 P10.5 crx+ retina GCAGAAGTGA (5) 7.7 0.0077 P10.5 crx+ retina GGCAGGGACT (3) 1.9 0.0019 P10.5 crx+ retina TTGGGTTTTT (9) 1.9 0.0019 Adult retinal GCAGAAGTGA (5) 7.4 0.0074 Adult retinal TTGGGTTTTT (9) 3.7 0.0037 Adult retinal AGGATCAGTC (3) 1.9 0.0019 ONL GCAGAAGTGA (5) 11.5 0.0115 ONL AATCACAAGC (4) 1.9 0.0019 ONL TTGGGTTTTT (9) 1.9 0.0019