Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235338	H2-Aa	histocompatibility 2, class II antigen A, alpha	17	17 18.65 cM	14960
Mm.235338	H2-Ea	histocompatibility 2, class II antigen E alpha	17	17 18.7 cM	14968
Gene Ontology	antigen presentation, exogenous antigen | antigen presentation, exogenous antigen via MHC class II | antigen presentation, exogenous peptide antigen | antigen processing, exogenous antigen via MHC class II | defense response | external side of plasma membrane | humoral defense mechanism (sensu Vertebrata) | humoral defense mechanism (sensu Vertebrata) | immune response | integral to membrane | lysosome | membrane | MHC class II receptor activity | plasma membrane | positive regulation of immune response | positive regulation of immune response
Human Homolog	HLA-DRA[major histocompatibility complex, class II, DR alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTTTATGA (4) 171.3 0.1713 P8 Cb GC AAACTGACTT (3) 8.2 0.0082 P8 Cb GC GAAAGTGGTG (5) 4.9 0.0049 P8 Cb GC TCAGAGTGAC (2) 3.3 0.0033 P8 Cb GC GCTCAAAAAA (11) 1.6 0.0016 P8 Cb GC GTGACCTCTC (6) 1.6 0.0016 Cb medulloblastoma GCCTTTATGA (4) 55.5 0.0555 Cb medulloblastoma AAACTGACTT (3) 6.9 0.0069 Cb medulloblastoma GAAAGTGGTG (5) 4.6 0.0046 Cb medulloblastoma GAAGAAAGTG (2) 2.3 0.0023 Cb medulloblastoma GCTCAAAAAA (11) 2.3 0.0023 Cb medulloblastoma GTGGTCAGGG (8) 2.3 0.0023 P8 GC+1d culture GCCTTTATGA (4) 94.7 0.0947 P8 GC+1d culture AAACTGACTT (3) 8 0.008 P8 GC+1d culture GCTCAAAAAA (11) 2.3 0.0023 P8 GC+1d culture GAAAAAGTGG (7) 1.1 0.0011 P8 GC+1d culture GAAGAAAGTG (2) 1.1 0.0011 P8 GC+1d culture GTGACCTCTC (6) 1.1 0.0011 P8 GC+SHH+1d culture GCCTTTATGA (4) 98.4 0.0984 P8 GC+SHH+1d culture AAACTGACTT (3) 4.7 0.0047 P8 GC+SHH+1d culture GTGACCTCTC (6) 3.5 0.0035 P8 GC+SHH+1d culture GAAAAAGTGG (7) 2.3 0.0023 P8 GC+SHH+1d culture GCTCAAAAAA (11) 2.3 0.0023 P8 GC+SHH+1d culture TCAGAGTGAC (2) 1.2 0.0012 3T3 fibroblasts GCCTTTATGA (4) 84.1 0.0841 3T3 fibroblasts GAAAAAGTGG (7) 3.5 0.0035 E15 cortex GCCTTTATGA (4) 59.4 0.0594 E15 cortex AAACTGACTT (3) 9.9 0.0099 E15 cortex GAAAGTGGTG (5) 4.9 0.0049 P1 cortex GCCTTTATGA (4) 54.5 0.0545 P1 cortex GAAAAAGTGG (7) 9.1 0.0091 Hypothalamus GCCTTTATGA (4) 25.4 0.0254 Hypothalamus AAACTGACTT (3) 7.2 0.0072 Hypothalamus GAAAAAGTGG (7) 1.8 0.0018 Hypothalamus GAAAGTGGTG (5) 1.8 0.0018 Hypothalamus GCTCAAAAAA (11) 1.8 0.0018 Hypothalamus GTGACCTCTC (6) 1.8 0.0018 Hypothalamus GTGGTCAGGG (8) 1.8 0.0018 E12.5 retina GCCTTTATGA (4) 232.8 0.2328 E12.5 retina AAACTGACTT (3) 15 0.015 E12.5 retina TGTCAACTCA (5) 1.9 0.0019 E14.5 retina GCCTTTATGA (4) 74.7 0.0747 E14.5 retina AAACTGACTT (3) 14.6 0.0146 E14.5 retina GAAAAAGTGG (7) 12.8 0.0128 E14.5 retina GCTCAAAAAA (11) 3.6 0.0036 E16.5 retina GCCTTTATGA (4) 83.3 0.0833 E16.5 retina AAACTGACTT (3) 9.1 0.0091 E16.5 retina GAAAAAGTGG (7) 1.8 0.0018 E16.5 retina GAAGAAAGTG (2) 1.8 0.0018 E16.5 retina GCTCAAAAAA (11) 1.8 0.0018 E18.5 retina GCCTTTATGA (4) 60 0.06 E18.5 retina AAACTGACTT (3) 7.3 0.0073 E18.5 retina GAAAAAGTGG (7) 3.6 0.0036 E18.5 retina GCTCAAAAAA (11) 1.8 0.0018 E18.5 retina GTGGTCAGGG (8) 1.8 0.0018 P0.5 retina GCCTTTATGA (4) 160.9 0.1609 P0.5 retina GTGACCTCTC (6) 3.9 0.0039 P0.5 retina TGTCAACTCA (5) 3.9 0.0039 P0.5 retina AAACTGACTT (3) 2 0.002 P0.5 retina GAAAGTGGTG (5) 2 0.002 P0.5 retina GAAGAAAGTG (2) 2 0.002 P2.5 retina GCCTTTATGA (4) 52.8 0.0528 P2.5 retina AAACTGACTT (3) 8.8 0.0088 P2.5 retina GAAAAAGTGG (7) 3.5 0.0035 P2.5 retina GAAAGTGGTG (5) 1.8 0.0018 P4.5 retina GCCTTTATGA (4) 49.5 0.0495 P4.5 retina AAACTGACTT (3) 4 0.004 P4.5 retina GAAAAAGTGG (7) 2 0.002 P4.5 retina GAAAGTGGTG (5) 2 0.002 P4.5 retina GTGGTCAGGG (8) 2 0.002 P6.5 retina GCCTTTATGA (4) 61.7 0.0617 P6.5 retina AAACTGACTT (3) 11.7 0.0117 P6.5 retina GCTCAAAAAA (11) 6.7 0.0067 P6.5 retina GAAAAAGTGG (7) 5 0.005 P10.5 crx- retina GCCTTTATGA (4) 163.5 0.1635 P10.5 crx- retina AAACTGACTT (3) 24.2 0.0242 P10.5 crx- retina GAAAAAGTGG (7) 1.9 0.0019 P10.5 crx+ retina GCCTTTATGA (4) 44.2 0.0442 P10.5 crx+ retina AAACTGACTT (3) 7.7 0.0077 P10.5 crx+ retina TGTCAACTCA (5) 7.7 0.0077 P10.5 crx+ retina GAAAAAGTGG (7) 1.9 0.0019 P10.5 crx+ retina GAAAGTGGTG (5) 1.9 0.0019 Adult retinal GCCTTTATGA (4) 35.2 0.0352 Adult retinal AAACTGACTT (3) 1.9 0.0019 Adult retinal GCTCAAAAAA (11) 1.9 0.0019 ONL GCCTTTATGA (4) 57.5 0.0575 ONL AAACTGACTT (3) 5.7 0.0057 ONL GAAAAAGTGG (7) 1.9 0.0019 ONL GAAGAAAGTG (2) 1.9 0.0019 ONL GCTCAAAAAA (11) 1.9 0.0019 ONL GTGGTCAGGG (8) 1.9 0.0019 ONL TGTCAACTCA (5) 1.9 0.0019