Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235523	Spg20	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	3		229285
Gene Ontology	extracellular space
Human Homolog	SPG20[spastic paraplegia 20, spartin (Troyer syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTACACTGC (2) 14.7 0.0147 P8 Cb GC TTTGTGTTTT (7) 6.5 0.0065 P8 Cb GC GTATTTTATT (6) 4.9 0.0049 P8 Cb GC GTGAAGAAAA (5) 1.6 0.0016 P8 Cb GC TTCCCTGGGC (2) 1.6 0.0016 Cb medulloblastoma TTTGTGTTTT (7) 11.6 0.0116 Cb medulloblastoma CATAAATGTG (8) 2.3 0.0023 Cb medulloblastoma GGTGGGGGGC (7) 2.3 0.0023 Cb medulloblastoma GTATTTTATT (6) 2.3 0.0023 Cb medulloblastoma TTCCCTGGGC (2) 2.3 0.0023 P8 GC+1d culture TTTGTGTTTT (7) 12.6 0.0126 P8 GC+1d culture GTATTTTATT (6) 2.3 0.0023 P8 GC+1d culture GTGAAGAAAA (5) 2.3 0.0023 P8 GC+1d culture GTGGCTTAAA (2) 1.1 0.0011 P8 GC+1d culture TCTACACTGC (2) 1.1 0.0011 P8 GC+1d culture TTCTTTTGTG (3) 1.1 0.0011 P8 GC+SHH+1d culture TTTGTGTTTT (7) 19.9 0.0199 P8 GC+SHH+1d culture GTATTTTATT (6) 8.2 0.0082 P8 GC+SHH+1d culture GTGAAGAAAA (5) 3.5 0.0035 P8 GC+SHH+1d culture GGTGGGGGGC (7) 1.2 0.0012 P8 GC+SHH+1d culture TTCTTTTGTG (3) 1.2 0.0012 3T3 fibroblasts GTGGGCTCAC (14) 3.5 0.0035 3T3 fibroblasts TCTACACTGC (2) 3.5 0.0035 3T3 fibroblasts TTTGTGTTTT (7) 3.5 0.0035 E15 cortex GTGGGCTCAC (14) 9.9 0.0099 P1 cortex TTCTTTTGTG (3) 4.5 0.0045 P1 cortex TTTGTGTTTT (7) 4.5 0.0045 Hypothalamus TTTGTGTTTT (7) 7.2 0.0072 Hypothalamus GTGAAGAAAA (5) 3.6 0.0036 Hypothalamus GTGGCTTAAA (2) 3.6 0.0036 Hypothalamus GTGGGCTCAC (14) 3.6 0.0036 Hypothalamus GTATTTTATT (6) 1.8 0.0018 E12.5 retina TTTGTGTTTT (7) 11.3 0.0113 E12.5 retina GAGAAGAGGA (5) 1.9 0.0019 E12.5 retina GTATTTTATT (6) 1.9 0.0019 E12.5 retina GTGGCTTAAA (2) 1.9 0.0019 E12.5 retina GTGGGCTCAC (14) 1.9 0.0019 E14.5 retina TTTGTGTTTT (7) 16.4 0.0164 E14.5 retina GTGAAGAAAA (5) 5.5 0.0055 E14.5 retina GTATTTTATT (6) 3.6 0.0036 E14.5 retina GTGGCTTAAA (2) 3.6 0.0036 E14.5 retina CATAAATGTG (8) 1.8 0.0018 E14.5 retina TCTACACTGC (2) 1.8 0.0018 E16.5 retina TTTGTGTTTT (7) 16.3 0.0163 E16.5 retina GTGGGCTCAC (14) 5.4 0.0054 E16.5 retina GTGAAGAAAA (5) 3.6 0.0036 E16.5 retina GTATTTTATT (6) 1.8 0.0018 E16.5 retina GTGGCTTAAA (2) 1.8 0.0018 E18.5 retina TTTGTGTTTT (7) 29.1 0.0291 E18.5 retina GTATTTTATT (6) 1.8 0.0018 E18.5 retina GTGAAGAAAA (5) 1.8 0.0018 E18.5 retina GTGGCTTAAA (2) 1.8 0.0018 P0.5 retina TTTGTGTTTT (7) 17.7 0.0177 P0.5 retina GTGGGCTCAC (14) 3.9 0.0039 P0.5 retina TTCCCTGGGC (2) 3.9 0.0039 P0.5 retina GTGGCTTAAA (2) 2 0.002 P2.5 retina TTTGTGTTTT (7) 8.8 0.0088 P2.5 retina GTGGGCTCAC (14) 5.3 0.0053 P2.5 retina GTATTTTATT (6) 3.5 0.0035 P2.5 retina GTGAAGAAAA (5) 1.8 0.0018 P2.5 retina GTGGCTTAAA (2) 1.8 0.0018 P2.5 retina TTCCCTGGGC (2) 1.8 0.0018 P2.5 retina TTCTTTTGTG (3) 1.8 0.0018 P4.5 retina TTTGTGTTTT (7) 23.8 0.0238 P4.5 retina GTGGGCTCAC (14) 7.9 0.0079 P4.5 retina CATAAATGTG (8) 2 0.002 P4.5 retina GAGAAGAGGA (5) 2 0.002 P4.5 retina GGTGGGGGGC (7) 2 0.002 P6.5 retina TTTGTGTTTT (7) 5 0.005 P6.5 retina GTGGCTTAAA (2) 3.3 0.0033 P6.5 retina GTGGGCTCAC (14) 3.3 0.0033 P6.5 retina GTATTTTATT (6) 1.7 0.0017 P6.5 retina GTGAAGAAAA (5) 1.7 0.0017 P10.5 crx- retina TTTGTGTTTT (7) 14.9 0.0149 P10.5 crx- retina GTGGGCTCAC (14) 5.6 0.0056 P10.5 crx- retina TTCTTTTGTG (3) 1.9 0.0019 P10.5 crx+ retina TTTGTGTTTT (7) 17.3 0.0173 P10.5 crx+ retina GTGGGCTCAC (14) 5.8 0.0058 P10.5 crx+ retina GAGAAGAGGA (5) 1.9 0.0019 P10.5 crx+ retina GCGGAGGACA 1.9 0.0019 P10.5 crx+ retina GTGAAGAAAA (5) 1.9 0.0019 P10.5 crx+ retina TCTACACTGC (2) 1.9 0.0019 P10.5 crx+ retina TTCTTTTGTG (3) 1.9 0.0019 Adult retinal TCTACACTGC (2) 9.3 0.0093 Adult retinal GTGGGCTCAC (14) 7.4 0.0074 Adult retinal GAGAAGAGGA (5) 1.9 0.0019 Adult retinal GTGGCTTAAA (2) 1.9 0.0019 ONL TTTGTGTTTT (7) 7.7 0.0077 ONL GCGGAGGACA 5.7 0.0057 ONL GTGGGCTCAC (14) 5.7 0.0057 ONL TTCTTTTGTG (3) 3.8 0.0038 ONL TCTACACTGC (2) 1.9 0.0019