Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24042	Sfrs6	splicing factor, arginine/serine-rich 6	2	2 79.8 cM	67996
Gene Ontology	mRNA splice site selection | nuclear mRNA splicing, via spliceosome | nucleic acid binding | nucleus | pre-mRNA splicing factor activity | RNA binding
Human Homolog	SFRS6[splicing factor, arginine/serine-rich 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 126 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC AGTGTGAAAC (3) 8.2 0.0082 P8 Cb GC CCTGTAGACC 6.5 0.0065 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CCTGTAGCCC (2) 3.3 0.0033 P8 Cb GC TCCCCTCCCC (7) 1.6 0.0016 P8 Cb GC TCCCCTCCGC 1.6 0.0016 P8 Cb GC TGATTAAAGT 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma AGTGTGAAAC (3) 6.9 0.0069 Cb medulloblastoma CCTGTAGCCC (2) 4.6 0.0046 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture AGTGTGAAAC (3) 8 0.008 P8 GC+1d culture CCTGTAGACC 4.6 0.0046 P8 GC+1d culture CCTGTAGCCC (2) 2.3 0.0023 P8 GC+1d culture CAAATAAAGG (5) 1.1 0.0011 P8 GC+1d culture GCAGGTATCA (2) 1.1 0.0011 P8 GC+1d culture TGTGTTTGTT (2) 1.1 0.0011 P8 GC+1d culture TTCTTTTGTT (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture AGTGTGAAAC (3) 4.7 0.0047 P8 GC+SHH+1d culture CAGTCAGAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GCAGGTATCA (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CCTGTAGACC 7 0.007 3T3 fibroblasts GCAGGTATCA (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex AGTGTGAAAC (3) 9.9 0.0099 E15 cortex CCTGTAGACC 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TATCCAAGGG (3) 9.1 0.0091 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus AGTGTGAAAC (3) 3.6 0.0036 Hypothalamus TGATTAAAGT 3.6 0.0036 Hypothalamus CCTGTAGCCC (2) 1.8 0.0018 Hypothalamus TCCCCTCCGC 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AGTGTGAAAC (3) 18.8 0.0188 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CAGTCAGAAA (2) 3.8 0.0038 E12.5 retina CAATAAGGCA 1.9 0.0019 E12.5 retina CCTGTAGACC 1.9 0.0019 E12.5 retina GCAGGTATCA (2) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina AGTGTGAAAC (3) 16.4 0.0164 E14.5 retina GCAGGTATCA (2) 3.6 0.0036 E14.5 retina CCTGTAGACC 1.8 0.0018 E14.5 retina TATCCAAGGG (3) 1.8 0.0018 E14.5 retina TGATTAAAGT 1.8 0.0018 E14.5 retina TTCTTTTGTT (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina AGTGTGAAAC (3) 14.5 0.0145 E16.5 retina GCAGGTATCA (2) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina CAGTCAGAAA (2) 1.8 0.0018 E16.5 retina CCTGTAGACC 1.8 0.0018 E16.5 retina TCCCCTCCGC 1.8 0.0018 E16.5 retina TGATTAAAGT 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina AGTGTGAAAC (3) 20 0.02 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GCAGGTATCA (2) 7.3 0.0073 E18.5 retina CCTGTAGCCC (2) 1.8 0.0018 E18.5 retina TGATTAAAGT 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTGTAGACC 19.6 0.0196 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina AGTGTGAAAC (3) 3.9 0.0039 P0.5 retina CAATAAGGCA 2 0.002 P0.5 retina CAGTCAGAAA (2) 2 0.002 P0.5 retina CCTGTAGCCC (2) 2 0.002 P0.5 retina TCCCCTCCGC 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina AGTGTGAAAC (3) 10.6 0.0106 P2.5 retina CCTGTAGACC 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GCAGGTATCA (2) 5.3 0.0053 P2.5 retina CAAATAAAGG (5) 1.8 0.0018 P2.5 retina CAATAAGGCA 1.8 0.0018 P2.5 retina CAGTCAGAAA (2) 1.8 0.0018 P2.5 retina TGTGTTTGTT (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina AGTGTGAAAC (3) 23.8 0.0238 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CAGTCAGAAA (2) 2 0.002 P4.5 retina GCAGGTATCA (2) 2 0.002 P4.5 retina TCCCCTCCGC 2 0.002 P4.5 retina TGTGTTTGTT (2) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CCTGTAGCCC (2) 5 0.005 P6.5 retina AGTGTGAAAC (3) 3.3 0.0033 P6.5 retina CCTGTAGACC 3.3 0.0033 P6.5 retina CAAATAAAGG (5) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AGTGTGAAAC (3) 5.6 0.0056 P10.5 crx- retina CCTGTAGACC 5.6 0.0056 P10.5 crx- retina GCAGGTATCA (2) 3.7 0.0037 P10.5 crx- retina TCCCCTCCCC (7) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AGTGTGAAAC (3) 5.8 0.0058 P10.5 crx+ retina CCTGTAGACC 5.8 0.0058 P10.5 crx+ retina GCAGGTATCA (2) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CCTGTAGCCC (2) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal CCTGTAGACC 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal AGTGTGAAAC (3) 5.6 0.0056 Adult retinal CCTGTAGCCC (2) 3.7 0.0037 Adult retinal CAAATAAAGG (5) 1.9 0.0019 Adult retinal GCAGGTATCA (2) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AGTGTGAAAC (3) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CAGTCAGAAA (2) 1.9 0.0019 ONL GCAGGTATCA (2) 1.9 0.0019 ONL TCCCCTCCCC (7) 1.9 0.0019 ONL TTCTTTTGTT (4) 1.9 0.0019