Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.242459	Cops5	COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)	1	1 3.6 cM	26754
Gene Ontology	protein binding | regulation of transcription, DNA-dependent | signalosome complex | transcription coactivator activity | transcription factor complex
Human Homolog	COPS5[COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GACTGATGTC 6.5 0.0065 P8 Cb GC GATGGAATAA (2) 3.3 0.0033 P8 Cb GC GTCACAAACT (2) 1.6 0.0016 Cb medulloblastoma GACTGATGTC 4.6 0.0046 Cb medulloblastoma GATGGAATAA (2) 4.6 0.0046 Cb medulloblastoma GCTGATGCTC (5) 4.6 0.0046 Cb medulloblastoma AAACTGCCAC (4) 2.3 0.0023 P8 GC+1d culture GACTGATGTC 9.1 0.0091 P8 GC+1d culture GCTGATGCTC (5) 5.7 0.0057 P8 GC+1d culture GATGGAATAA (2) 4.6 0.0046 P8 GC+1d culture GAATGATTTC (5) 2.3 0.0023 P8 GC+1d culture GTCACAAACT (2) 1.1 0.0011 P8 GC+SHH+1d culture GATGGAATAA (2) 9.4 0.0094 P8 GC+SHH+1d culture GACTGATGTC 7 0.007 P8 GC+SHH+1d culture GCTGATGCTC (5) 3.5 0.0035 P8 GC+SHH+1d culture GTCACAAACT (2) 2.3 0.0023 3T3 fibroblasts GACTGATGTC 3.5 0.0035 E15 cortex GACTGATGTC 4.9 0.0049 P1 cortex GATGGAATAA (2) 9.1 0.0091 P1 cortex GACTGATGTC 4.5 0.0045 Hypothalamus GACTGATGTC 3.6 0.0036 Hypothalamus AAACTGCCAC (4) 1.8 0.0018 Hypothalamus TGATGATCAC (6) 1.8 0.0018 Hypothalamus TGTTTCTAAG (2) 1.8 0.0018 E12.5 retina GACTGATGTC 7.5 0.0075 E12.5 retina GCTGATGCTC (5) 5.6 0.0056 E12.5 retina TGTTTCTAAG (2) 3.8 0.0038 E12.5 retina GACAGTTTCG 1.9 0.0019 E14.5 retina GACTGATGTC 5.5 0.0055 E16.5 retina GACTGATGTC 3.6 0.0036 E16.5 retina GCTGATGCTC (5) 3.6 0.0036 E16.5 retina GACAGTTTCG 1.8 0.0018 E16.5 retina TGATGATCAC (6) 1.8 0.0018 E18.5 retina GACTGATGTC 3.6 0.0036 E18.5 retina GAATGATTTC (5) 1.8 0.0018 E18.5 retina GCTGATGCTC (5) 1.8 0.0018 E18.5 retina TGATGATCAC (6) 1.8 0.0018 P0.5 retina GACTGATGTC 9.8 0.0098 P0.5 retina GCTGATGCTC (5) 2 0.002 P2.5 retina GACTGATGTC 5.3 0.0053 P2.5 retina GCTGATGCTC (5) 5.3 0.0053 P2.5 retina TGATGATCAC (6) 1.8 0.0018 P4.5 retina GACTGATGTC 5.9 0.0059 P4.5 retina GATGGAATAA (2) 4 0.004 P4.5 retina GAATGATTTC (5) 2 0.002 P4.5 retina GCTGATGCTC (5) 2 0.002 P6.5 retina GACTGATGTC 5 0.005 P6.5 retina GCTGATGCTC (5) 3.3 0.0033 P6.5 retina GAATGATTTC (5) 1.7 0.0017 P6.5 retina GATGGAATAA (2) 1.7 0.0017 P10.5 crx- retina GACTGATGTC 11.1 0.0111 P10.5 crx- retina GACAGTTTCG 1.9 0.0019 P10.5 crx+ retina GACTGATGTC 9.6 0.0096 P10.5 crx+ retina AAACTGCCAC (4) 1.9 0.0019 P10.5 crx+ retina GCTGATGCTC (5) 1.9 0.0019 P10.5 crx+ retina GTCACAAACT (2) 1.9 0.0019 Adult retinal GACTGATGTC 7.4 0.0074 Adult retinal GAATGATTTC (5) 1.9 0.0019 Adult retinal GATGGAATAA (2) 1.9 0.0019 Adult retinal GCTGATGCTC (5) 1.9 0.0019 ONL GCTGATGCTC (5) 1.9 0.0019 ONL GTCACAAACT (2) 1.9 0.0019