Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.243797	3110098I04Rik	RIKEN cDNA 3110098I04 gene	11		78510
Mm.243797	4930579A11Rik	RIKEN cDNA 4930579A11 gene	11		75909
Human Homolog	VMP1[likely ortholog of rat vacuole membrane protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGAGGCTG (3) 16.3 0.0163 P8 Cb GC AGAAAGAAGA (6) 1.6 0.0016 P8 Cb GC CTCTCAACAA (4) 1.6 0.0016 P8 Cb GC GAACAATTTA (3) 1.6 0.0016 P8 Cb GC GCACAAACTA (3) 1.6 0.0016 Cb medulloblastoma CCAGAGGCTG (3) 13.9 0.0139 Cb medulloblastoma GAACAATTTA (3) 11.6 0.0116 Cb medulloblastoma GCTCTTGGCT (5) 6.9 0.0069 Cb medulloblastoma CAAGATTGCT (2) 2.3 0.0023 Cb medulloblastoma GCACAAACTA (3) 2.3 0.0023 P8 GC+1d culture GCACAAACTA (3) 2.3 0.0023 P8 GC+1d culture GTTTGCAGTC (2) 2.3 0.0023 P8 GC+1d culture AAAAAGCCTT (10) 1.1 0.0011 P8 GC+1d culture AGAAAGAAGA (6) 1.1 0.0011 P8 GC+1d culture CATACACAAA (6) 1.1 0.0011 P8 GC+1d culture CCAGAGGCTG (3) 1.1 0.0011 P8 GC+1d culture CTCTCAACAA (4) 1.1 0.0011 P8 GC+1d culture GGGCCAGGGG (4) 1.1 0.0011 P8 GC+SHH+1d culture AGAAAGAAGA (6) 4.7 0.0047 P8 GC+SHH+1d culture GAACAATTTA (3) 3.5 0.0035 P8 GC+SHH+1d culture GGGCCAGGGG (4) 3.5 0.0035 P8 GC+SHH+1d culture AGCAAGAAGA (5) 2.3 0.0023 P8 GC+SHH+1d culture CCAGAGGCTG (3) 2.3 0.0023 P8 GC+SHH+1d culture GCACAAACTA (3) 1.2 0.0012 3T3 fibroblasts GCACAAACTA (3) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GTTTGCAGTC (2) 7 0.007 E15 cortex GGGCCAGGGG (4) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex AGAAAGAAGA (6) 9.1 0.0091 P1 cortex GAACAATTTA (3) 9.1 0.0091 P1 cortex GCACAAACTA (3) 9.1 0.0091 P1 cortex CAACATTGCT (4) 4.5 0.0045 P1 cortex CATACACAAA (6) 4.5 0.0045 P1 cortex GCTCTTGGCT (5) 4.5 0.0045 Hypothalamus CAAGATTGCT (2) 3.6 0.0036 Hypothalamus CATACACAAA (6) 3.6 0.0036 Hypothalamus AGCAAGAAGA (5) 1.8 0.0018 Hypothalamus GCACAAACTA (3) 1.8 0.0018 Hypothalamus GGGCCAGGGG (4) 1.8 0.0018 E12.5 retina CATACACAAA (6) 5.6 0.0056 E12.5 retina AGAAAGAAGA (6) 3.8 0.0038 E12.5 retina AAAAAGCCTT (10) 1.9 0.0019 E12.5 retina CAAGATTGCT (2) 1.9 0.0019 E12.5 retina CTCTCAACAA (4) 1.9 0.0019 E12.5 retina GAACAATTTA (3) 1.9 0.0019 E14.5 retina CAACATTGCT (4) 1.8 0.0018 E14.5 retina GCACAAACTA (3) 1.8 0.0018 E16.5 retina AGAAAGAAGA (6) 3.6 0.0036 E16.5 retina GAACAATTTA (3) 3.6 0.0036 E16.5 retina AGCAAGAAGA (5) 1.8 0.0018 E18.5 retina CAAGATTGCT (2) 1.8 0.0018 E18.5 retina CATACACAAA (6) 1.8 0.0018 E18.5 retina GGGCCAGGGG (4) 1.8 0.0018 P0.5 retina AGAAAGAAGA (6) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GCACAAACTA (3) 2 0.002 P0.5 retina GGGCCAGGGG (4) 2 0.002 P2.5 retina AGAAAGAAGA (6) 3.5 0.0035 P2.5 retina GCACAAACTA (3) 3.5 0.0035 P2.5 retina CATACACAAA (6) 1.8 0.0018 P2.5 retina GAACAATTTA (3) 1.8 0.0018 P2.5 retina GCTCTTGGCT (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GGGCCAGGGG (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GGGCCAGGGG (4) 6.7 0.0067 P6.5 retina AGAAAGAAGA (6) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CATACACAAA (6) 1.7 0.0017 P6.5 retina GAACAATTTA (3) 1.7 0.0017 P6.5 retina GCTCTTGGCT (5) 1.7 0.0017 P10.5 crx- retina GGGCCAGGGG (4) 3.7 0.0037 P10.5 crx- retina AGAAAGAAGA (6) 1.9 0.0019 P10.5 crx- retina GAACAATTTA (3) 1.9 0.0019 P10.5 crx- retina GCTCTTGGCT (5) 1.9 0.0019 P10.5 crx- retina GTGAGGTCCT (3) 1.9 0.0019 P10.5 crx+ retina CCAGAGGCTG (3) 13.5 0.0135 P10.5 crx+ retina AGAAAGAAGA (6) 5.8 0.0058 P10.5 crx+ retina CATACACAAA (6) 3.8 0.0038 P10.5 crx+ retina GAACAATTTA (3) 3.8 0.0038 P10.5 crx+ retina GGGCCAGGGG (4) 3.8 0.0038 P10.5 crx+ retina GTGAGGTCCT (3) 3.8 0.0038 P10.5 crx+ retina CAAGATTGCT (2) 1.9 0.0019 P10.5 crx+ retina GCTCTTGGCT (5) 1.9 0.0019 Adult retinal GCTCTTGGCT (5) 3.7 0.0037 Adult retinal CAAGATTGCT (2) 1.9 0.0019 Adult retinal CCAGAGGCTG (3) 1.9 0.0019 Adult retinal GGGCCAGGGG (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTGAGGTCCT (3) 1.9 0.0019 Adult retinal GTTTGCAGTC (2) 1.9 0.0019 ONL CCAGAGGCTG (3) 9.6 0.0096 ONL GTCATAGCTG (590) 5.7 0.0057 ONL CATACACAAA (6) 1.9 0.0019