Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24624	9530071D11Rik	RIKEN cDNA 9530071D11 gene	2		78740
Mm.24624	Rxra	retinoid X receptor alpha	2	2 17.0 cM	20181
Gene Ontology	DNA binding | ligand-dependent nuclear receptor activity | nucleus | receptor activity | regulation of transcription, DNA-dependent | steroid binding | steroid hormone receptor activity | transcription factor activity
Human Homolog	RXRA[retinoid X receptor, alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGTGGGGGGG (15) 27.7 0.0277 P8 Cb GC AGAGGAGAGA (3) 3.3 0.0033 P8 Cb GC GAGATGCTGG (5) 1.6 0.0016 Cb medulloblastoma GGTGGGGGGG (15) 23.1 0.0231 Cb medulloblastoma GAGATGCTGG (5) 2.3 0.0023 P8 GC+1d culture GGTGGGGGGG (15) 18.3 0.0183 P8 GC+1d culture GAGATGCTGG (5) 8 0.008 P8 GC+1d culture TGAAAATAAA (9) 2.3 0.0023 P8 GC+SHH+1d culture GGTGGGGGGG (15) 17.6 0.0176 P8 GC+SHH+1d culture AGAGGAGAGA (3) 8.2 0.0082 P8 GC+SHH+1d culture GAGATGCTGG (5) 7 0.007 P8 GC+SHH+1d culture GGAGCTGACC (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGGCAGTGT (4) 1.2 0.0012 P8 GC+SHH+1d culture GTGGTGTGGG (10) 1.2 0.0012 3T3 fibroblasts GAGATGCTGG (5) 35 0.035 3T3 fibroblasts GGTGGGGGGG (15) 10.5 0.0105 E15 cortex GGTGGGGGGG (15) 39.6 0.0396 E15 cortex GAGATGCTGG (5) 4.9 0.0049 P1 cortex GGTGGGGGGG (15) 9.1 0.0091 P1 cortex GAGATGCTGG (5) 4.5 0.0045 Hypothalamus GGTGGGGGGG (15) 10.9 0.0109 Hypothalamus GAGATGCTGG (5) 5.4 0.0054 Hypothalamus AGAGGAGAGA (3) 1.8 0.0018 Hypothalamus GGGGCAGTGT (4) 1.8 0.0018 Hypothalamus TGAAAATAAA (9) 1.8 0.0018 E12.5 retina GGTGGGGGGG (15) 11.3 0.0113 E12.5 retina AGAGGAGAGA (3) 3.8 0.0038 E12.5 retina GGAGCTGACC (2) 1.9 0.0019 E14.5 retina GGTGGGGGGG (15) 5.5 0.0055 E14.5 retina AGAGGAGAGA (3) 1.8 0.0018 E14.5 retina GAGATGCTGG (5) 1.8 0.0018 E16.5 retina GGTGGGGGGG (15) 5.4 0.0054 E16.5 retina AGAGGAGAGA (3) 3.6 0.0036 E16.5 retina GAGATGCTGG (5) 1.8 0.0018 E16.5 retina GTGGTGTGGG (10) 1.8 0.0018 E18.5 retina GGTGGGGGGG (15) 14.6 0.0146 E18.5 retina AGAGGAGAGA (3) 7.3 0.0073 E18.5 retina TGAAAATAAA (9) 1.8 0.0018 P0.5 retina GAGATGCTGG (5) 19.6 0.0196 P0.5 retina GGTGGGGGGG (15) 19.6 0.0196 P0.5 retina AGAGGAGAGA (3) 2 0.002 P0.5 retina GAAATGCCTG (5) 2 0.002 P2.5 retina GGTGGGGGGG (15) 24.6 0.0246 P2.5 retina AGAGGAGAGA (3) 7 0.007 P2.5 retina GTGGTGTGGG (10) 1.8 0.0018 P4.5 retina GGTGGGGGGG (15) 15.9 0.0159 P4.5 retina AGAGGAGAGA (3) 4 0.004 P4.5 retina GAAATGCCTG (5) 2 0.002 P4.5 retina GAGATGCTGG (5) 2 0.002 P4.5 retina GGAGCTGACC (2) 2 0.002 P6.5 retina GGTGGGGGGG (15) 15 0.015 P6.5 retina AGAGGAGAGA (3) 8.3 0.0083 P6.5 retina GGGGCAGTGT (4) 6.7 0.0067 P6.5 retina GTGGTGTGGG (10) 3.3 0.0033 P6.5 retina GAGATGCTGG (5) 1.7 0.0017 P10.5 crx- retina GGTGGGGGGG (15) 13 0.013 P10.5 crx- retina GAGATGCTGG (5) 9.3 0.0093 P10.5 crx- retina AGAGGAGAGA (3) 1.9 0.0019 P10.5 crx- retina GTGGTGTGGG (10) 1.9 0.0019 P10.5 crx- retina TGAAAATAAA (9) 1.9 0.0019 P10.5 crx+ retina GGTGGGGGGG (15) 30.8 0.0308 P10.5 crx+ retina AGAGGAGAGA (3) 5.8 0.0058 P10.5 crx+ retina GGGGCAGTGT (4) 1.9 0.0019 P10.5 crx+ retina GTGGTGTGGG (10) 1.9 0.0019 P10.5 crx+ retina TGAAAATAAA (9) 1.9 0.0019 Adult retinal GGTGGGGGGG (15) 13 0.013 Adult retinal GAGATGCTGG (5) 5.6 0.0056 Adult retinal AGAGGAGAGA (3) 1.9 0.0019 Adult retinal GGAGCTGACC (2) 1.9 0.0019 ONL GGTGGGGGGG (15) 15.3 0.0153 ONL AGAGGAGAGA (3) 1.9 0.0019 ONL GAGATGCTGG (5) 1.9 0.0019