Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.246240
Zranb1
zinc finger, RAN-binding domain containing 1
7
7 65.6 cM
360216
Mm.246240
1500002F19Rik
RIKEN cDNA 1500002F19 gene
7
76683
Mm.246240
2510016G02Rik
RIKEN cDNA 2510016G02 gene
7
72438
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 13 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 193 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
AGGAGATGGA
(
3
)
11.4
0.0114
P8 Cb GC
CAGCATAAAT (
4
)
6.5
0.0065
P8 Cb GC
GGCACTCATA
(
4
)
1.6
0.0016
P8 Cb GC
TATCATCTTT (
5
)
1.6
0.0016
P8 Cb GC
TGCACTTCCT (
4
)
1.6
0.0016
P8 Cb GC
TTCTATTCAT
(
6
)
1.6
0.0016
P8 Cb GC
TTGTGGTGAC (
26
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
CAGCATAAAT (
4
)
18.5
0.0185
Cb medulloblastoma
AGGAGATGGA
(
3
)
13.9
0.0139
Cb medulloblastoma
TTGTGGTGAC (
26
)
6.9
0.0069
Cb medulloblastoma
CAGAAAAGCT
(
7
)
2.3
0.0023
Cb medulloblastoma
GAGCGAGCCA
(
3
)
2.3
0.0023
Cb medulloblastoma
GCCGCCTGGG
(
6
)
2.3
0.0023
Cb medulloblastoma
GGCACTCATA
(
4
)
2.3
0.0023
Cb medulloblastoma
TATCATCTTT (
5
)
2.3
0.0023
Cb medulloblastoma
TTGGTTAGTT (
3
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
TTGTGGTGAC (
26
)
9.1
0.0091
P8 GC+1d culture
AGGAGATGGA
(
3
)
5.7
0.0057
P8 GC+1d culture
CAGCATAAAT (
4
)
5.7
0.0057
P8 GC+1d culture
TTCTATTCAT
(
6
)
4.6
0.0046
P8 GC+1d culture
CAGACAGTCT
(
4
)
3.4
0.0034
P8 GC+1d culture
TAACTAGCTG
(
3
)
3.4
0.0034
P8 GC+1d culture
AATTTTTTTT (
12
)
2.3
0.0023
P8 GC+1d culture
TATCATCTTT (
5
)
2.3
0.0023
P8 GC+1d culture
CAGAAAAGCT
(
7
)
1.1
0.0011
P8 GC+1d culture
GCCGCCTGGG
(
6
)
1.1
0.0011
P8 GC+1d culture
GCTGGGTGGC
(
6
)
1.1
0.0011
P8 GC+1d culture
TAGTGTCCTG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
AGGAGATGGA
(
3
)
8.2
0.0082
P8 GC+SHH+1d culture
TTGTGGTGAC (
26
)
5.9
0.0059
P8 GC+SHH+1d culture
TATCATCTTT (
5
)
3.5
0.0035
P8 GC+SHH+1d culture
CAGCATAAAT (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AATTTTTTTT (
12
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCGCCTGGG
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GGCACTCATA
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TAACTAGCTG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCACTTCCT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTCTATTCAT
(
6
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
GCCGCCTGGG
(
6
)
7
0.007
3T3 fibroblasts
AGGAGATGGA
(
3
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
AGGAGATGGA
(
3
)
9.9
0.0099
E15 cortex
GCTGGGTGGC
(
6
)
9.9
0.0099
E15 cortex
AATTTTTTTT (
12
)
4.9
0.0049
E15 cortex
CAGACAGTCT
(
4
)
4.9
0.0049
E15 cortex
GAGATCAGCT
(
5
)
4.9
0.0049
E15 cortex
TTCTATTCAT
(
6
)
4.9
0.0049
E15 cortex
TTGTGGTGAC (
26
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
GCCGCCTGGG
(
6
)
4.5
0.0045
P1 cortex
GGCACTCATA
(
4
)
4.5
0.0045
P1 cortex
TTCTATTCAT
(
6
)
4.5
0.0045
P1 cortex
TTGTGGTGAC (
26
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
TTGTGGTGAC (
26
)
7.2
0.0072
Hypothalamus
AGGAGATGGA
(
3
)
5.4
0.0054
Hypothalamus
CAGCATAAAT (
4
)
3.6
0.0036
Hypothalamus
CAGAAAAGCT
(
7
)
1.8
0.0018
Hypothalamus
GAGATCAGCT
(
5
)
1.8
0.0018
Hypothalamus
TGCACTTCCT (
4
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
AGGAGATGGA
(
3
)
9.4
0.0094
E12.5 retina
TTCTATTCAT
(
6
)
3.8
0.0038
E12.5 retina
TTGTGGTGAC (
26
)
3.8
0.0038
E12.5 retina
CAGCATAAAT (
4
)
1.9
0.0019
E12.5 retina
TAACTAGCTG
(
3
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
AGGAGATGGA
(
3
)
14.6
0.0146
E14.5 retina
TTGTGGTGAC (
26
)
7.3
0.0073
E14.5 retina
CAGCATAAAT (
4
)
5.5
0.0055
E14.5 retina
GCTGGGTGGC
(
6
)
3.6
0.0036
E14.5 retina
TTCTATTCAT
(
6
)
3.6
0.0036
E14.5 retina
CAGACAGTCT
(
4
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
AGGAGATGGA
(
3
)
19.9
0.0199
E16.5 retina
TTGTGGTGAC (
26
)
14.5
0.0145
E16.5 retina
CAGCATAAAT (
4
)
5.4
0.0054
E16.5 retina
GAGCGAGCCA
(
3
)
3.6
0.0036
E16.5 retina
TAACTAGCTG
(
3
)
3.6
0.0036
E16.5 retina
TTCTATTCAT
(
6
)
3.6
0.0036
E16.5 retina
CAGACAGTCT
(
4
)
1.8
0.0018
E16.5 retina
GCTGGGTGGC
(
6
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
AGGAGATGGA
(
3
)
9.1
0.0091
E18.5 retina
CAGCATAAAT (
4
)
9.1
0.0091
E18.5 retina
TTGTGGTGAC (
26
)
9.1
0.0091
E18.5 retina
TAACTAGCTG
(
3
)
3.6
0.0036
E18.5 retina
GCTGGGTGGC
(
6
)
1.8
0.0018
E18.5 retina
TTCTATTCAT
(
6
)
1.8
0.0018
E18.5 retina
TTGGTTAGTT (
3
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
AGGAGATGGA
(
3
)
9.8
0.0098
P0.5 retina
TTGTGGTGAC (
26
)
7.9
0.0079
P0.5 retina
CAGCATAAAT (
4
)
5.9
0.0059
P0.5 retina
CAGACAGTCT
(
4
)
3.9
0.0039
P0.5 retina
TAACTAGCTG
(
3
)
2
0.002
P0.5 retina
TAGTGTCCTG
(
3
)
2
0.002
P0.5 retina
TTGGTTAGTT (
3
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
AGGAGATGGA
(
3
)
19.4
0.0194
P2.5 retina
TTGTGGTGAC (
26
)
14.1
0.0141
P2.5 retina
CAGCATAAAT (
4
)
7
0.007
P2.5 retina
GGCACTCATA
(
4
)
5.3
0.0053
P2.5 retina
TAGTGTCCTG
(
3
)
5.3
0.0053
P2.5 retina
TATCATCTTT (
5
)
5.3
0.0053
P2.5 retina
TTCTATTCAT
(
6
)
3.5
0.0035
P2.5 retina
GCTGGGTGGC
(
6
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
AGGAGATGGA
(
3
)
39.6
0.0396
P4.5 retina
CAGCATAAAT (
4
)
21.8
0.0218
P4.5 retina
TTGTGGTGAC (
26
)
19.8
0.0198
P4.5 retina
TTCTATTCAT
(
6
)
5.9
0.0059
P4.5 retina
GGCACTCATA
(
4
)
4
0.004
P4.5 retina
GCCGCCTGGG
(
6
)
2
0.002
P4.5 retina
GCTGGGTGGC
(
6
)
2
0.002
P4.5 retina
TAACTAGCTG
(
3
)
2
0.002
P4.5 retina
TATCATCTTT (
5
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
AGGAGATGGA
(
3
)
40
0.04
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
GGCACTCATA
(
4
)
13.3
0.0133
P6.5 retina
TTGTGGTGAC (
26
)
11.7
0.0117
P6.5 retina
CAGCATAAAT (
4
)
10
0.01
P6.5 retina
TTCTATTCAT
(
6
)
6.7
0.0067
P6.5 retina
TAACTAGCTG
(
3
)
3.3
0.0033
P6.5 retina
GCTGGGTGGC
(
6
)
1.7
0.0017
P6.5 retina
TATCATCTTT (
5
)
1.7
0.0017
P10.5 crx- retina
AGGAGATGGA
(
3
)
53.9
0.0539
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
TTCTATTCAT
(
6
)
9.3
0.0093
P10.5 crx- retina
TTGTGGTGAC (
26
)
9.3
0.0093
P10.5 crx- retina
CAGCATAAAT (
4
)
5.6
0.0056
P10.5 crx- retina
GCTGGGTGGC
(
6
)
3.7
0.0037
P10.5 crx- retina
GGCACTCATA
(
4
)
3.7
0.0037
P10.5 crx- retina
GAGATCAGCT
(
5
)
1.9
0.0019
P10.5 crx- retina
GCCGCCTGGG
(
6
)
1.9
0.0019
P10.5 crx- retina
TAACTAGCTG
(
3
)
1.9
0.0019
P10.5 crx- retina
TAGTGTCCTG
(
3
)
1.9
0.0019
P10.5 crx- retina
TATCATCTTT (
5
)
1.9
0.0019
P10.5 crx- retina
TGCACTTCCT (
4
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
AGGAGATGGA
(
3
)
26.9
0.0269
P10.5 crx+ retina
TTGTGGTGAC (
26
)
23.1
0.0231
P10.5 crx+ retina
CAGCATAAAT (
4
)
13.5
0.0135
P10.5 crx+ retina
GCCGCCTGGG
(
6
)
11.5
0.0115
P10.5 crx+ retina
TTCTATTCAT
(
6
)
5.8
0.0058
P10.5 crx+ retina
TAGTGTCCTG
(
3
)
3.8
0.0038
P10.5 crx+ retina
CAGACAGTCT
(
4
)
1.9
0.0019
P10.5 crx+ retina
GGCACTCATA
(
4
)
1.9
0.0019
P10.5 crx+ retina
TAACTAGCTG
(
3
)
1.9
0.0019
P10.5 crx+ retina
TATCATCTTT (
5
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
TTGTGGTGAC (
26
)
7.4
0.0074
Adult retinal
AGGAGATGGA
(
3
)
5.6
0.0056
Adult retinal
CAGCATAAAT (
4
)
3.7
0.0037
Adult retinal
GCCGCCTGGG
(
6
)
3.7
0.0037
Adult retinal
TAACTAGCTG
(
3
)
3.7
0.0037
Adult retinal
CAGAAAAGCT
(
7
)
1.9
0.0019
Adult retinal
CAGACAGTCT
(
4
)
1.9
0.0019
Adult retinal
GCTGGGTGGC
(
6
)
1.9
0.0019
Adult retinal
TATCATCTTT (
5
)
1.9
0.0019
Adult retinal
TTCTATTCAT
(
6
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
TTGTGGTGAC (
26
)
5.7
0.0057
ONL
GGCACTCATA
(
4
)
3.8
0.0038
ONL
AGGAGATGGA
(
3
)
1.9
0.0019
ONL
CAGAAAAGCT
(
7
)
1.9
0.0019
ONL
GAGCGAGCCA
(
3
)
1.9
0.0019
ONL
GCCGCCTGGG
(
6
)
1.9
0.0019
ONL
TAACTAGCTG
(
3
)
1.9
0.0019
