Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.246304	Sypl	synaptophysin-like protein	12	12 15.0 cM	19027
Gene Ontology	integral to membrane | membrane | membrane | secretory granule | synaptic vesicle | transport | transporter activity
Human Homolog	SYPL[synaptophysin-like protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC ACAAAGTGTC (4) 6.5 0.0065 P8 Cb GC TTGGGTATAA (2) 4.9 0.0049 P8 Cb GC AATAAAGCAA (2) 3.3 0.0033 P8 Cb GC GAAATAAAGA (5) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma ACAAAGTGTC (4) 13.9 0.0139 Cb medulloblastoma GAAATAAAGA (5) 6.9 0.0069 Cb medulloblastoma AATAAAGCAA (2) 2.3 0.0023 Cb medulloblastoma CAGGTAAAAC (4) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TTGGGTATAA (2) 8 0.008 P8 GC+1d culture ACAAAGTGTC (4) 4.6 0.0046 P8 GC+1d culture GAAATAAAGA (5) 4.6 0.0046 P8 GC+1d culture AATAAAGCAA (2) 1.1 0.0011 P8 GC+1d culture CTTTCTGCTC (8) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GAAATAAAGA (5) 5.9 0.0059 P8 GC+SHH+1d culture TTGGGTATAA (2) 3.5 0.0035 P8 GC+SHH+1d culture AATAAAGCAA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACAAAGTGTC (4) 1.2 0.0012 P8 GC+SHH+1d culture CACACAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture CTTTCTGCTC (8) 1.2 0.0012 P8 GC+SHH+1d culture GGTATATCCG 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CAGGTAAAAC (4) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CTTTCTGCTC (8) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex ACAAAGTGTC (4) 9.1 0.0091 P1 cortex TTGGGTATAA (2) 9.1 0.0091 P1 cortex CTTTCTGCTC (8) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus ACAAAGTGTC (4) 12.7 0.0127 Hypothalamus GAAATAAAGA (5) 5.4 0.0054 Hypothalamus TTGGGTATAA (2) 5.4 0.0054 Hypothalamus CACACAAAAT (4) 1.8 0.0018 Hypothalamus CTTTCTGCTC (8) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina ACAAAGTGTC (4) 13.1 0.0131 E12.5 retina GAAATAAAGA (5) 3.8 0.0038 E12.5 retina TTGGGTATAA (2) 3.8 0.0038 E12.5 retina TGCTTCAGAA (10) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TTGGGTATAA (2) 5.5 0.0055 E14.5 retina AATAAAGCAA (2) 3.6 0.0036 E14.5 retina CAGGTAAAAC (4) 3.6 0.0036 E14.5 retina GAAATAAAGA (5) 3.6 0.0036 E14.5 retina ACAAAGTGTC (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TTGGGTATAA (2) 10.9 0.0109 E16.5 retina CTTTCTGCTC (8) 3.6 0.0036 E16.5 retina GAAATAAAGA (5) 3.6 0.0036 E16.5 retina CAGGTAAAAC (4) 1.8 0.0018 E16.5 retina GGTATATCCG 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina TTGGGTATAA (2) 5.5 0.0055 E18.5 retina AATAAAGCAA (2) 3.6 0.0036 E18.5 retina ACAAAGTGTC (4) 3.6 0.0036 E18.5 retina CAGGTAAAAC (4) 3.6 0.0036 E18.5 retina CTTTCTGCTC (8) 1.8 0.0018 E18.5 retina GAAATAAAGA (5) 1.8 0.0018 E18.5 retina GTATATTTCT 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CAGGTAAAAC (4) 7.9 0.0079 P0.5 retina TTGGGTATAA (2) 7.9 0.0079 P0.5 retina ACAAAGTGTC (4) 5.9 0.0059 P0.5 retina GAAATAAAGA (5) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TTGGGTATAA (2) 5.3 0.0053 P2.5 retina CTTTCTGCTC (8) 3.5 0.0035 P2.5 retina GAAATAAAGA (5) 3.5 0.0035 P2.5 retina AATAAAGCAA (2) 1.8 0.0018 P2.5 retina ACAAAGTGTC (4) 1.8 0.0018 P2.5 retina CAGGTAAAAC (4) 1.8 0.0018 P2.5 retina GTATATTTCT 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GAAATAAAGA (5) 5.9 0.0059 P4.5 retina CTTTCTGCTC (8) 4 0.004 P4.5 retina CAGGTAAAAC (4) 2 0.002 P4.5 retina TGCTTCAGAA (10) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GAAATAAAGA (5) 8.3 0.0083 P6.5 retina ACAAAGTGTC (4) 6.7 0.0067 P6.5 retina TTGGGTATAA (2) 3.3 0.0033 P6.5 retina CTTTCTGCTC (8) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TTGGGTATAA (2) 7.4 0.0074 P10.5 crx- retina GAAATAAAGA (5) 3.7 0.0037 P10.5 crx- retina CTTTCTGCTC (8) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GAAATAAAGA (5) 7.7 0.0077 P10.5 crx+ retina ACAAAGTGTC (4) 3.8 0.0038 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal ACAAAGTGTC (4) 9.3 0.0093 Adult retinal CACACAAAAT (4) 3.7 0.0037 Adult retinal GAAATAAAGA (5) 1.9 0.0019 Adult retinal GTATATTTCT 1.9 0.0019 Adult retinal TTGGGTATAA (2) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GAAATAAAGA (5) 5.7 0.0057 ONL CAGGTAAAAC (4) 3.8 0.0038 ONL GGTATATCCG 3.8 0.0038 ONL GTATATTTCT 1.9 0.0019 ONL TGCTTCAGAA (10) 1.9 0.0019