Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24632	Gtf2f1	general transcription factor IIF, polypeptide 1	17		98053
Gene Ontology	DNA binding | general RNA polymerase II transcription factor activity | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription coactivator activity | transcription factor TFIIF complex | transcription from Pol II promoter | transcription initiation from Pol II promoter | translation initiation factor activity
Human Homolog	GTF2F1[general transcription factor IIF, polypeptide 1, 74kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 45 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCACAAAGG (2) 3.3 0.0033 P8 Cb GC TATTTCAAAA (14) 3.3 0.0033 Cb medulloblastoma TCTTGGAAGT 9.2 0.0092 Cb medulloblastoma TATTTCAAAA (14) 4.6 0.0046 P8 GC+1d culture ACCACAAAGG (2) 3.4 0.0034 P8 GC+1d culture GGCTTGCGGG (2) 2.3 0.0023 P8 GC+1d culture TATTTCAAAA (14) 2.3 0.0023 P8 GC+SHH+1d culture TATTTCAAAA (14) 2.3 0.0023 P8 GC+SHH+1d culture GGCTTGCGGG (2) 1.2 0.0012 3T3 fibroblasts ACCACAAAGG (2) 17.5 0.0175 3T3 fibroblasts ACCTGGAGGA (3) 3.5 0.0035 3T3 fibroblasts GGCTTGCGGG (2) 3.5 0.0035 E15 cortex ACCTGGAGGA (3) 4.9 0.0049 P1 cortex ACCACAAAGG (2) 9.1 0.0091 Hypothalamus TATTTCAAAA (14) 3.6 0.0036 Hypothalamus AAGAGTGCAG (3) 1.8 0.0018 E12.5 retina ACCACAAAGG (2) 5.6 0.0056 E14.5 retina TATTTCAAAA (14) 5.5 0.0055 E14.5 retina TCTTGGAAGT 1.8 0.0018 E16.5 retina AAGAGTGCAG (3) 1.8 0.0018 E16.5 retina GGCTTGCGGG (2) 1.8 0.0018 E16.5 retina TATTTCAAAA (14) 1.8 0.0018 E18.5 retina AAGAGTGCAG (3) 1.8 0.0018 E18.5 retina TATTTCAAAA (14) 1.8 0.0018 P0.5 retina ACCACAAAGG (2) 5.9 0.0059 P2.5 retina AAGAGTGCAG (3) 3.5 0.0035 P2.5 retina ACCACAAAGG (2) 3.5 0.0035 P2.5 retina TATTTCAAAA (14) 3.5 0.0035 P2.5 retina ACCTGGAGGA (3) 1.8 0.0018 P2.5 retina TCTTGGAAGT 1.8 0.0018 P4.5 retina ACCACAAAGG (2) 5.9 0.0059 P4.5 retina TATTTCAAAA (14) 2 0.002 P4.5 retina TCTTGGAAGT 2 0.002 P6.5 retina ACCACAAAGG (2) 6.7 0.0067 P6.5 retina TATTTCAAAA (14) 1.7 0.0017 P10.5 crx- retina ACCACAAAGG (2) 14.9 0.0149 P10.5 crx- retina GGCTTGCGGG (2) 1.9 0.0019 P10.5 crx+ retina ACCACAAAGG (2) 3.8 0.0038 P10.5 crx+ retina TCTTGGAAGT 3.8 0.0038 P10.5 crx+ retina TATTTCAAAA (14) 1.9 0.0019 Adult retinal ACCACAAAGG (2) 5.6 0.0056 Adult retinal TATTTCAAAA (14) 1.9 0.0019 Adult retinal TCTTGGAAGT 1.9 0.0019 ONL ACCACAAAGG (2) 1.9 0.0019 ONL TATTTCAAAA (14) 1.9 0.0019