Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.247542	Prdx4	peroxiredoxin 4	X	X 67.7 cM	53381
Gene Ontology	antioxidant activity | biological_process unknown | extracellular space | mitochondrion | oxidoreductase activity | peroxidase activity
Human Homolog	PRDX4[peroxiredoxin 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGAAAGTCT (4) 32.6 0.0326 P8 Cb GC GAGAAGTCTG (10) 24.5 0.0245 P8 Cb GC CTACCACTTC 4.9 0.0049 P8 Cb GC GAGAATTTTC (5) 4.9 0.0049 P8 Cb GC GAGAACTTTG (5) 3.3 0.0033 P8 Cb GC CTTGTCAGTG (4) 1.6 0.0016 Cb medulloblastoma GAGAAGTCTG (10) 9.2 0.0092 Cb medulloblastoma GAGAACTTTG (5) 2.3 0.0023 Cb medulloblastoma GAGAATTTTC (5) 2.3 0.0023 P8 GC+1d culture GAGAAAGTCT (4) 77.6 0.0776 P8 GC+1d culture GAGAAGTCTG (10) 9.1 0.0091 P8 GC+1d culture GAGAATTTTC (5) 4.6 0.0046 P8 GC+1d culture GAGAACTTTG (5) 2.3 0.0023 P8 GC+SHH+1d culture GAGAAAGTCT (4) 63.2 0.0632 P8 GC+SHH+1d culture GAGAAGTCTG (10) 23.4 0.0234 P8 GC+SHH+1d culture CCTTTAGTTT (7) 2.3 0.0023 P8 GC+SHH+1d culture CTACCACTTC 1.2 0.0012 P8 GC+SHH+1d culture GAGAACTTTG (5) 1.2 0.0012 3T3 fibroblasts GAGAAGTCTG (10) 10.5 0.0105 3T3 fibroblasts GAGAAAGTCT (4) 7 0.007 E15 cortex GAGAAAGTCT (4) 59.4 0.0594 E15 cortex GAGAACTTTG (5) 4.9 0.0049 E15 cortex GAGAATTTTC (5) 4.9 0.0049 P1 cortex GAGAAAGTCT (4) 13.6 0.0136 P1 cortex GAGAACTTTG (5) 4.5 0.0045 Hypothalamus GAGAAAGTCT (4) 9.1 0.0091 Hypothalamus GAGAACTTTG (5) 7.2 0.0072 Hypothalamus GAGAAGTCTG (10) 5.4 0.0054 Hypothalamus GAGAATTTTC (5) 3.6 0.0036 E12.5 retina GAGAAAGTCT (4) 58.2 0.0582 E12.5 retina CTACCACTTC 7.5 0.0075 E12.5 retina GAGAAGTCTG (10) 7.5 0.0075 E14.5 retina GAGAAAGTCT (4) 40.1 0.0401 E14.5 retina GAGAAGTCTG (10) 9.1 0.0091 E14.5 retina CTACCACTTC 3.6 0.0036 E16.5 retina GAGAAAGTCT (4) 50.7 0.0507 E16.5 retina GAGAAGTCTG (10) 30.8 0.0308 E16.5 retina CTACCACTTC 1.8 0.0018 E16.5 retina GAGGAGTCTG (5) 1.8 0.0018 E18.5 retina GAGAAAGTCT (4) 54.6 0.0546 E18.5 retina GAGAAGTCTG (10) 12.7 0.0127 E18.5 retina GAGAATTTTC (5) 5.5 0.0055 P0.5 retina GAGAAAGTCT (4) 39.3 0.0393 P0.5 retina GAGAAGTCTG (10) 13.7 0.0137 P0.5 retina GAGAAGTTTG (6) 2 0.002 P0.5 retina GAGAATTTTC (5) 2 0.002 P2.5 retina GAGAAAGTCT (4) 47.5 0.0475 P2.5 retina GAGAAGTCTG (10) 14.1 0.0141 P2.5 retina CCTTTAGTTT (7) 1.8 0.0018 P4.5 retina GAGAAAGTCT (4) 55.5 0.0555 P4.5 retina GAGAACTTTG (5) 4 0.004 P4.5 retina GAGAAGTCTG (10) 4 0.004 P4.5 retina CCTTTAGTTT (7) 2 0.002 P4.5 retina CTTGTCAGTG (4) 2 0.002 P4.5 retina GAGGAGTCTG (5) 2 0.002 P6.5 retina GAGAAAGTCT (4) 21.7 0.0217 P6.5 retina GAGAAGTCTG (10) 5 0.005 P6.5 retina GAGAATTTTC (5) 1.7 0.0017 P10.5 crx- retina GAGAAAGTCT (4) 9.3 0.0093 P10.5 crx- retina GAGAAGTCTG (10) 5.6 0.0056 P10.5 crx- retina CCTTTAGTTT (7) 1.9 0.0019 P10.5 crx- retina GAGAACTTTG (5) 1.9 0.0019 P10.5 crx+ retina GAGAAAGTCT (4) 11.5 0.0115 P10.5 crx+ retina GAGAAGTCTG (10) 1.9 0.0019 P10.5 crx+ retina GAGAATTTTC (5) 1.9 0.0019 Adult retinal CTTGTCAGTG (4) 1.9 0.0019 Adult retinal GAGAAGTCTG (10) 1.9 0.0019 Adult retinal GAGAAGTTTG (6) 1.9 0.0019 Adult retinal GAGAATTTTC (5) 1.9 0.0019 ONL GAGAAAGTCT (4) 3.8 0.0038 ONL GAGGAGTCTG (5) 1.9 0.0019