Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.24772
Apip
APAF1 interacting protein
2
56369
Human Homolog
MMRP19[likely ortholog of mouse monocyte macrophage 19]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 54 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGTGTGTGTG (
115
)
27.7
0.0277
P8 Cb GC
TTTGTGTGTG (
9
)
1.6
0.0016
Cb medulloblastoma
TGTGTGTGTG (
115
)
30.1
0.0301
Cb medulloblastoma
CAGGCAAACA (
10
)
6.9
0.0069
Cb medulloblastoma
GAAAAAGCAA (
8
)
4.6
0.0046
Cb medulloblastoma
AAGAAGATGG
(
3
)
2.3
0.0023
Cb medulloblastoma
TTTGTGTGTG (
9
)
2.3
0.0023
P8 GC+1d culture
TGTGTGTGTG (
115
)
27.4
0.0274
P8 GC+1d culture
AAGAAGATGG
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TGTGTGTGTG (
115
)
28.1
0.0281
P8 GC+SHH+1d culture
AAGAAGATGG
(
3
)
7
0.007
P8 GC+SHH+1d culture
TTTGTGTGTG (
9
)
1.2
0.0012
3T3 fibroblasts
TGTGTGTGTG (
115
)
28
0.028
3T3 fibroblasts
AAGAAGATGG
(
3
)
3.5
0.0035
3T3 fibroblasts
CAGGCAAACA (
10
)
3.5
0.0035
P1 cortex
TGTGTGTGTG (
115
)
18.2
0.0182
P1 cortex
TTTGTGTGTG (
9
)
4.5
0.0045
Hypothalamus
TGTGTGTGTG (
115
)
25.4
0.0254
Hypothalamus
GAAAAAGCAA (
8
)
3.6
0.0036
E12.5 retina
TGTGTGTGTG (
115
)
43.2
0.0432
E12.5 retina
AAGAAGATGG
(
3
)
3.8
0.0038
E12.5 retina
CAGGCAAACA (
10
)
3.8
0.0038
E12.5 retina
TTTGTGTGTG (
9
)
3.8
0.0038
E14.5 retina
TGTGTGTGTG (
115
)
54.7
0.0547
E14.5 retina
CAGGCAAACA (
10
)
1.8
0.0018
E16.5 retina
TGTGTGTGTG (
115
)
39.8
0.0398
E16.5 retina
GAAAAAGCAA (
8
)
3.6
0.0036
E18.5 retina
TGTGTGTGTG (
115
)
47.3
0.0473
P0.5 retina
TGTGTGTGTG (
115
)
21.6
0.0216
P0.5 retina
CAGGCAAACA (
10
)
3.9
0.0039
P0.5 retina
GAAAAAGCAA (
8
)
3.9
0.0039
P2.5 retina
TGTGTGTGTG (
115
)
35.2
0.0352
P2.5 retina
CAGGCAAACA (
10
)
3.5
0.0035
P2.5 retina
TTTGTGTGTG (
9
)
1.8
0.0018
P4.5 retina
TGTGTGTGTG (
115
)
47.6
0.0476
P4.5 retina
CAGGCAAACA (
10
)
4
0.004
P4.5 retina
AAGAAGATGG
(
3
)
2
0.002
P4.5 retina
GAAAAAGCAA (
8
)
2
0.002
P4.5 retina
TTTGTGTGTG (
9
)
2
0.002
P6.5 retina
TGTGTGTGTG (
115
)
41.7
0.0417
P6.5 retina
CAGGCAAACA (
10
)
6.7
0.0067
P10.5 crx- retina
TGTGTGTGTG (
115
)
59.4
0.0594
P10.5 crx- retina
AAGAAGATGG
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGTG (
115
)
44.2
0.0442
P10.5 crx+ retina
CAGGCAAACA (
10
)
3.8
0.0038
P10.5 crx+ retina
AAGAAGATGG
(
3
)
1.9
0.0019
Adult retinal
TGTGTGTGTG (
115
)
53.7
0.0537
Adult retinal
AAGAAGATGG
(
3
)
3.7
0.0037
Adult retinal
CAGGCAAACA (
10
)
1.9
0.0019
Adult retinal
TTTGTGTGTG (
9
)
1.9
0.0019
ONL
TGTGTGTGTG (
115
)
23
0.023
ONL
TTTGTGTGTG (
9
)
5.7
0.0057
ONL
CAGGCAAACA (
10
)
3.8
0.0038
ONL
GAAAAAGCAA (
8
)
3.8
0.0038
