Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248353	Hcfc1	host cell factor C1	X	X 29.54 cM	15161
Gene Ontology	nucleus
Human Homolog	HCFC1[host cell factor C1 (VP16-accessory protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 47 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTGTCTTG (6) 16.3 0.0163 P8 Cb GC TTTAGTCAAA 3.3 0.0033 P8 Cb GC ACTTTCCACA (2) 1.6 0.0016 Cb medulloblastoma CACTCACATT (2) 2.3 0.0023 P8 GC+1d culture GATTGTCTTG (6) 9.1 0.0091 P8 GC+1d culture TTTAGTCAAA 9.1 0.0091 P8 GC+1d culture CACTCACATT (2) 1.1 0.0011 P8 GC+1d culture TCGTCTCCAG 1.1 0.0011 P8 GC+SHH+1d culture GATTGTCTTG (6) 12.9 0.0129 P8 GC+SHH+1d culture TTTAGTCAAA 3.5 0.0035 P8 GC+SHH+1d culture ACTTTCCACA (2) 1.2 0.0012 P8 GC+SHH+1d culture CACTCACATT (2) 1.2 0.0012 P8 GC+SHH+1d culture TCGTCTCCAG 1.2 0.0012 3T3 fibroblasts TCGTCTCCAG 3.5 0.0035 E15 cortex GATTGTCTTG (6) 4.9 0.0049 Hypothalamus GATTGTCTTG (6) 14.5 0.0145 Hypothalamus ACCTTCCTGT (5) 1.8 0.0018 Hypothalamus TTTAGTCAAA 1.8 0.0018 E12.5 retina GATTGTCTTG (6) 20.7 0.0207 E12.5 retina TTTAGTCAAA 5.6 0.0056 E12.5 retina ACCTTCCTGT (5) 1.9 0.0019 E12.5 retina CACTCACATT (2) 1.9 0.0019 E12.5 retina TCGTCTCCAG 1.9 0.0019 E14.5 retina GATTGTCTTG (6) 20 0.02 E14.5 retina TTTAGTCAAA 3.6 0.0036 E16.5 retina GATTGTCTTG (6) 12.7 0.0127 E16.5 retina ACTTTCCACA (2) 1.8 0.0018 E18.5 retina GATTGTCTTG (6) 45.5 0.0455 E18.5 retina CACTCACATT (2) 1.8 0.0018 E18.5 retina TCGTCTCCAG 1.8 0.0018 E18.5 retina TTTAGTCAAA 1.8 0.0018 P0.5 retina GATTGTCTTG (6) 5.9 0.0059 P0.5 retina ACTTTCCACA (2) 2 0.002 P0.5 retina GCCTTTCCAA (3) 2 0.002 P2.5 retina GATTGTCTTG (6) 10.6 0.0106 P2.5 retina TTTAGTCAAA 1.8 0.0018 P4.5 retina GATTGTCTTG (6) 11.9 0.0119 P4.5 retina GCCTTTCCAA (3) 2 0.002 P4.5 retina TTTAGTCAAA 2 0.002 P6.5 retina GATTGTCTTG (6) 10 0.01 P6.5 retina GCCTTTCCAA (3) 1.7 0.0017 P10.5 crx- retina GATTGTCTTG (6) 7.4 0.0074 P10.5 crx- retina ACCTTCCTGT (5) 1.9 0.0019 P10.5 crx- retina CACTCACATT (2) 1.9 0.0019 P10.5 crx+ retina GATTGTCTTG (6) 11.5 0.0115 Adult retinal GATTGTCTTG (6) 3.7 0.0037 ONL GATTGTCTTG (6) 7.7 0.0077