Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2509	Col6a1	procollagen, type VI, alpha 1	10	10 41.1 cM	12833
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport | protein binding | proteolysis and peptidolysis | subtilase activity
Human Homolog	COL6A1[collagen, type VI, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTCCCCCAC (2) 9.8 0.0098 P8 Cb GC ATTAAAAATA (3) 1.6 0.0016 P8 Cb GC GTCTTTTCTG (4) 1.6 0.0016 Cb medulloblastoma GCTCCCCCAC (2) 20.8 0.0208 Cb medulloblastoma AGTTCAGCTG (3) 2.3 0.0023 Cb medulloblastoma ATCTTGGTCT (2) 2.3 0.0023 Cb medulloblastoma GTCTTTTCTG (4) 2.3 0.0023 P8 GC+1d culture GCTCCCCCAC (2) 5.7 0.0057 P8 GC+1d culture GCCCTACAGA (2) 2.3 0.0023 P8 GC+1d culture AGGCTGGCCC (7) 1.1 0.0011 P8 GC+1d culture AGTTCAGCTG (3) 1.1 0.0011 P8 GC+1d culture ATTAAAAATA (3) 1.1 0.0011 P8 GC+1d culture CAGACAACCC (3) 1.1 0.0011 P8 GC+SHH+1d culture GCTCCCCCAC (2) 7 0.007 P8 GC+SHH+1d culture ATTAAAAATA (3) 2.3 0.0023 P8 GC+SHH+1d culture GCCCTACAGA (2) 1.2 0.0012 3T3 fibroblasts GCTCCCCCAC (2) 42.1 0.0421 3T3 fibroblasts AGGCTGGCCC (7) 3.5 0.0035 P1 cortex ATTAAAAATA (3) 9.1 0.0091 Hypothalamus GCTCCCCCAC (2) 18.1 0.0181 Hypothalamus ATCTTGGTCT (2) 5.4 0.0054 Hypothalamus ATTAAAAATA (3) 5.4 0.0054 Hypothalamus CAGACAACCC (3) 1.8 0.0018 Hypothalamus GCCCTACAGA (2) 1.8 0.0018 E12.5 retina GCTCCCCCAC (2) 3.8 0.0038 E12.5 retina AGGCTGGCCC (7) 1.9 0.0019 E12.5 retina GTCTTTTCTG (4) 1.9 0.0019 E14.5 retina GCCCTACAGA (2) 5.5 0.0055 E14.5 retina GCTCCCCCAC (2) 3.6 0.0036 E14.5 retina AGGCTGGCCC (7) 1.8 0.0018 E16.5 retina GCTCCCCCAC (2) 7.2 0.0072 E18.5 retina GCTCCCCCAC (2) 12.7 0.0127 P0.5 retina GCTCCCCCAC (2) 3.9 0.0039 P2.5 retina GCTCCCCCAC (2) 8.8 0.0088 P2.5 retina ATTAAAAATA (3) 3.5 0.0035 P2.5 retina AGGCTGGCCC (7) 1.8 0.0018 P2.5 retina GCCCTACAGA (2) 1.8 0.0018 P4.5 retina GCTCCCCCAC (2) 9.9 0.0099 P4.5 retina ATTAAAAATA (3) 4 0.004 P4.5 retina GCCCTACAGA (2) 2 0.002 P6.5 retina GCTCCCCCAC (2) 10 0.01 P6.5 retina ATTAAAAATA (3) 3.3 0.0033 P10.5 crx+ retina GCTCCCCCAC (2) 17.3 0.0173 Adult retinal GCTCCCCCAC (2) 5.6 0.0056 Adult retinal AGGCTGGCCC (7) 3.7 0.0037 Adult retinal ATTAAAAATA (3) 1.9 0.0019 Adult retinal CAGACAACCC (3) 1.9 0.0019 ONL AGTTCAGCTG (3) 1.9 0.0019