Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.251288	AI465420	expressed sequence AI465420	6		101106
Mm.251288	Chl1	cell adhesion molecule with homology to L1CAM	6		12661
Gene Ontology	axon guidance | behavior
Human Homolog	CHL1[cell adhesion molecule with homology to L1CAM (close homolog of L1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GACAAGAACT (5) 11.4 0.0114 P8 Cb GC TTCCTTTTTA (6) 4.9 0.0049 P8 Cb GC GAAGAGATAG (4) 3.3 0.0033 P8 Cb GC GAGTTCAGCT (4) 3.3 0.0033 Cb medulloblastoma GAGTTCAGCT (4) 27.7 0.0277 Cb medulloblastoma TTCCTTTTTA (6) 4.6 0.0046 Cb medulloblastoma AGAACAACAC (3) 2.3 0.0023 Cb medulloblastoma TGTAAAGAAA (5) 2.3 0.0023 Cb medulloblastoma TGTAATGAAA (4) 2.3 0.0023 P8 GC+1d culture GACAAGAACT (5) 3.4 0.0034 P8 GC+1d culture GAGTTCAGCT (4) 3.4 0.0034 P8 GC+1d culture TTCCTTTTTA (6) 3.4 0.0034 P8 GC+1d culture TGTAAAGAAA (5) 2.3 0.0023 P8 GC+1d culture GAAGAGATAG (4) 1.1 0.0011 P8 GC+1d culture TCAAAAAGAC (4) 1.1 0.0011 P8 GC+SHH+1d culture GACAAGAACT (5) 2.3 0.0023 P8 GC+SHH+1d culture GAGTTCAGCT (4) 2.3 0.0023 P8 GC+SHH+1d culture TCAAAAAGAC (4) 1.2 0.0012 P8 GC+SHH+1d culture TGTAATGAAA (4) 1.2 0.0012 E15 cortex GAGTTCAGCT (4) 14.8 0.0148 E15 cortex AGAACAACAC (3) 4.9 0.0049 E15 cortex TTCCTTTTTA (6) 4.9 0.0049 P1 cortex GAGTTCAGCT (4) 31.8 0.0318 P1 cortex AGAACAACAC (3) 9.1 0.0091 Hypothalamus GAGTTCAGCT (4) 5.4 0.0054 Hypothalamus GACAAGAACT (5) 3.6 0.0036 Hypothalamus GAAGAGATAG (4) 1.8 0.0018 Hypothalamus TCAAAAAGAC (4) 1.8 0.0018 Hypothalamus TGTAAAGAAA (5) 1.8 0.0018 Hypothalamus TGTAATGAAA (4) 1.8 0.0018 Hypothalamus TTCCTTTTTA (6) 1.8 0.0018 E12.5 retina TTCCTTTTTA (6) 5.6 0.0056 E14.5 retina GACAAGAACT (5) 1.8 0.0018 E14.5 retina TTCCTTTTTA (6) 1.8 0.0018 E16.5 retina GAGTTCAGCT (4) 3.6 0.0036 E16.5 retina TGTAAAGAAA (5) 3.6 0.0036 E16.5 retina TTCCTTTTTA (6) 1.8 0.0018 E18.5 retina GAAGAGATAG (4) 1.8 0.0018 E18.5 retina GACAAGAACT (5) 1.8 0.0018 E18.5 retina GAGTTCAGCT (4) 1.8 0.0018 E18.5 retina TTCCTTTTTA (6) 1.8 0.0018 P0.5 retina TTCCTTTTTA (6) 3.9 0.0039 P0.5 retina GAAGAGATAG (4) 2 0.002 P0.5 retina GACAAGAACT (5) 2 0.002 P0.5 retina GAGTTCAGCT (4) 2 0.002 P0.5 retina TGTAAAGAAA (5) 2 0.002 P2.5 retina TTCCTTTTTA (6) 7 0.007 P2.5 retina GAAGAGATAG (4) 1.8 0.0018 P2.5 retina GACAAGAACT (5) 1.8 0.0018 P4.5 retina TTCCTTTTTA (6) 5.9 0.0059 P4.5 retina GAGTTCAGCT (4) 2 0.002 P6.5 retina TTCCTTTTTA (6) 5 0.005 P6.5 retina GACAAGAACT (5) 3.3 0.0033 P6.5 retina GAAGAGATAG (4) 1.7 0.0017 P10.5 crx- retina GAAGAGATAG (4) 3.7 0.0037 P10.5 crx- retina GACAAGAACT (5) 1.9 0.0019 P10.5 crx- retina GAGTTCAGCT (4) 1.9 0.0019 P10.5 crx- retina TTCCTTTTTA (6) 1.9 0.0019 P10.5 crx+ retina GACAAGAACT (5) 3.8 0.0038 P10.5 crx+ retina GAGTTCAGCT (4) 1.9 0.0019 P10.5 crx+ retina TGTAAAGAAA (5) 1.9 0.0019 P10.5 crx+ retina TTCCTTTTTA (6) 1.9 0.0019 Adult retinal TTCCTTTTTA (6) 7.4 0.0074 Adult retinal GAAGAGATAG (4) 1.9 0.0019 Adult retinal GACAAGAACT (5) 1.9 0.0019 ONL TTCCTTTTTA (6) 9.6 0.0096 ONL GAAGAGATAG (4) 1.9 0.0019 ONL GACAAGAACT (5) 1.9 0.0019 ONL TGTAAAGAAA (5) 1.9 0.0019