Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.25203	Nckap1	NCK-associated protein 1	2	2 48.0 cM	50884
Mm.25203	AW822080	expressed sequence AW822080	2		99433
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAATTCAAAG (9) 8.2 0.0082 P8 Cb GC CTGCCGCCGC (3) 6.5 0.0065 P8 Cb GC CTGTTGTATT (4) 3.3 0.0033 P8 Cb GC CCGACGCCCC (3) 1.6 0.0016 P8 Cb GC GCGTATCTTT (3) 1.6 0.0016 P8 Cb GC TGCTGCTGTC (4) 1.6 0.0016 Cb medulloblastoma CTGCCGCCGC (3) 11.6 0.0116 Cb medulloblastoma GAATTCAAAG (9) 4.6 0.0046 Cb medulloblastoma GCAGACAACT (4) 4.6 0.0046 Cb medulloblastoma TGGAAGGTTA (5) 4.6 0.0046 Cb medulloblastoma ACCTCCCTAA (4) 2.3 0.0023 Cb medulloblastoma GCGTATCTTT (3) 2.3 0.0023 P8 GC+1d culture CTGCCGCCGC (3) 16 0.016 P8 GC+1d culture GAATTCAAAG (9) 9.1 0.0091 P8 GC+1d culture CCGACGCCCC (3) 4.6 0.0046 P8 GC+1d culture TGGAAGGTTA (5) 2.3 0.0023 P8 GC+1d culture CTGTTGTATT (4) 1.1 0.0011 P8 GC+1d culture GAAGAAAAAA (18) 1.1 0.0011 P8 GC+1d culture TGCTGCTGTC (4) 1.1 0.0011 P8 GC+SHH+1d culture GAATTCAAAG (9) 9.4 0.0094 P8 GC+SHH+1d culture CCGACGCCCC (3) 8.2 0.0082 P8 GC+SHH+1d culture CTGCCGCCGC (3) 8.2 0.0082 P8 GC+SHH+1d culture TGGAAGGTTA (5) 3.5 0.0035 P8 GC+SHH+1d culture CTGTTGTATT (4) 2.3 0.0023 P8 GC+SHH+1d culture GAAGAAAAAA (18) 1.2 0.0012 P8 GC+SHH+1d culture GCGTATCTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGCTGCTGTC (4) 1.2 0.0012 3T3 fibroblasts CTGCCGCCGC (3) 31.5 0.0315 3T3 fibroblasts CCGACGCCCC (3) 3.5 0.0035 3T3 fibroblasts TGCTGCTGTC (4) 3.5 0.0035 E15 cortex CTGCCGCCGC (3) 39.6 0.0396 E15 cortex GAATTCAAAG (9) 4.9 0.0049 E15 cortex GCGTATCTTT (3) 4.9 0.0049 P1 cortex CTGCCGCCGC (3) 27.3 0.0273 P1 cortex GAATTCAAAG (9) 4.5 0.0045 Hypothalamus CCGACGCCCC (3) 7.2 0.0072 Hypothalamus CTGCCGCCGC (3) 7.2 0.0072 Hypothalamus GCAGACAACT (4) 3.6 0.0036 E12.5 retina GAATTCAAAG (9) 9.4 0.0094 E12.5 retina CTGCCGCCGC (3) 5.6 0.0056 E12.5 retina CCGACGCCCC (3) 1.9 0.0019 E12.5 retina GAAGAAAAAA (18) 1.9 0.0019 E12.5 retina TGCTGCTGTC (4) 1.9 0.0019 E14.5 retina CCGACGCCCC (3) 9.1 0.0091 E14.5 retina CTGCCGCCGC (3) 3.6 0.0036 E14.5 retina GCAGACAACT (4) 3.6 0.0036 E14.5 retina TGGAAGGTTA (5) 3.6 0.0036 E14.5 retina GAAGAAAAAA (18) 1.8 0.0018 E14.5 retina GAATTCAAAG (9) 1.8 0.0018 E14.5 retina TGCTGCTGTC (4) 1.8 0.0018 E16.5 retina CCGACGCCCC (3) 14.5 0.0145 E16.5 retina GAATTCAAAG (9) 5.4 0.0054 E18.5 retina CCGACGCCCC (3) 1.8 0.0018 E18.5 retina CTGCCGCCGC (3) 1.8 0.0018 E18.5 retina GCGTATCTTT (3) 1.8 0.0018 E18.5 retina TGGAAGGTTA (5) 1.8 0.0018 P0.5 retina CTGCCGCCGC (3) 15.7 0.0157 P0.5 retina CCGACGCCCC (3) 3.9 0.0039 P0.5 retina CTGTTGTATT (4) 2 0.002 P0.5 retina GAATTCAAAG (9) 2 0.002 P0.5 retina TGGAAGGTTA (5) 2 0.002 P2.5 retina GAATTCAAAG (9) 8.8 0.0088 P2.5 retina CTGCCGCCGC (3) 5.3 0.0053 P2.5 retina CCGACGCCCC (3) 3.5 0.0035 P2.5 retina TGGAAGGTTA (5) 3.5 0.0035 P2.5 retina GAAGAAAAAA (18) 1.8 0.0018 P4.5 retina CCGACGCCCC (3) 13.9 0.0139 P4.5 retina GAATTCAAAG (9) 5.9 0.0059 P4.5 retina AAACTGTGTC (4) 2 0.002 P4.5 retina CTGCCGCCGC (3) 2 0.002 P4.5 retina GTAACCCAGC (4) 2 0.002 P4.5 retina TGCTGCTGTC (4) 2 0.002 P4.5 retina TGGAAGGTTA (5) 2 0.002 P6.5 retina CCGACGCCCC (3) 5 0.005 P6.5 retina CTGCCGCCGC (3) 5 0.005 P6.5 retina GAATTCAAAG (9) 5 0.005 P6.5 retina TGGAAGGTTA (5) 5 0.005 P6.5 retina GTAACCCAGC (4) 3.3 0.0033 P6.5 retina AAACTGTGTC (4) 1.7 0.0017 P6.5 retina GAAGAAAAAA (18) 1.7 0.0017 P10.5 crx- retina CCGACGCCCC (3) 5.6 0.0056 P10.5 crx- retina CTGCCGCCGC (3) 5.6 0.0056 P10.5 crx- retina GAATTCAAAG (9) 3.7 0.0037 P10.5 crx+ retina CTGCCGCCGC (3) 13.5 0.0135 P10.5 crx+ retina GCAGACAACT (4) 1.9 0.0019 P10.5 crx+ retina GTAACCCAGC (4) 1.9 0.0019 P10.5 crx+ retina TGCTGCTGTC (4) 1.9 0.0019 Adult retinal CTGCCGCCGC (3) 11.1 0.0111 Adult retinal GAATTCAAAG (9) 5.6 0.0056 Adult retinal ACCTCCCTAA (4) 1.9 0.0019 Adult retinal CCGACGCCCC (3) 1.9 0.0019 ONL CTGCCGCCGC (3) 9.6 0.0096 ONL GAATTCAAAG (9) 5.7 0.0057 ONL AAACTGTGTC (4) 1.9 0.0019 ONL ACCTCCCTAA (4) 1.9 0.0019 ONL CCGACGCCCC (3) 1.9 0.0019 ONL GAAGAAAAAA (18) 1.9 0.0019