Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.256422	Zfp162	zinc finger protein 162	19		22668
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | RNA binding | spliceosome complex
Human Homolog	SF1[splicing factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 155 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC GAGTGATTAT (2) 6.5 0.0065 P8 Cb GC CTCTGGTCAC (2) 3.3 0.0033 P8 Cb GC CTTTTAATCC (33) 3.3 0.0033 P8 Cb GC AAGAGGGAAG (4) 1.6 0.0016 P8 Cb GC AATTTCTCTG (2) 1.6 0.0016 P8 Cb GC CCTGTGTAAC (2) 1.6 0.0016 P8 Cb GC GCAACAGCAG (4) 1.6 0.0016 P8 Cb GC TGACCTCCAG (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma AGAGTGAGGA (3) 4.6 0.0046 Cb medulloblastoma TGTGTGCGAG (8) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture GAGTGATTAT (2) 13.7 0.0137 P8 GC+1d culture AGAGTGAGGA (3) 3.4 0.0034 P8 GC+1d culture CCTGTGTAAC (2) 2.3 0.0023 P8 GC+1d culture CTTTTAATCC (33) 1.1 0.0011 P8 GC+1d culture TGTGTGCGAG (8) 1.1 0.0011 P8 GC+1d culture TGTGTGTGGG (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture GAGTGATTAT (2) 9.4 0.0094 P8 GC+SHH+1d culture TGACCTCCAG (3) 3.5 0.0035 P8 GC+SHH+1d culture AAAAAGACTC (5) 2.3 0.0023 P8 GC+SHH+1d culture AAGAGGGAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture AGAGTGAGGA (3) 2.3 0.0023 P8 GC+SHH+1d culture GCAACAGCAG (4) 2.3 0.0023 P8 GC+SHH+1d culture CTTTTAATCC (33) 1.2 0.0012 P8 GC+SHH+1d culture GAGAGTGAGG (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 3T3 fibroblasts AGAGTGAGGA (3) 7 0.007 3T3 fibroblasts CCTGTGTAAC (2) 7 0.007 3T3 fibroblasts GAGAGTGAGG (3) 7 0.007 3T3 fibroblasts AAAAAGACTC (5) 3.5 0.0035 3T3 fibroblasts GAGTGATTAT (2) 3.5 0.0035 3T3 fibroblasts GCAACAGCAG (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGAGTGAGGA (3) 4.9 0.0049 E15 cortex GAGTGATTAT (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GAGTGATTAT (2) 27.3 0.0273 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex AAAAAGACTC (5) 9.1 0.0091 P1 cortex AGAGTGAGGA (3) 9.1 0.0091 P1 cortex CTTTTAATCC (33) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus AGAGTGAGGA (3) 3.6 0.0036 Hypothalamus CCTGTGTAAC (2) 1.8 0.0018 Hypothalamus GAGTGATTAT (2) 1.8 0.0018 Hypothalamus GCAACAGCAG (4) 1.8 0.0018 Hypothalamus GCCCTCCTCC (11) 1.8 0.0018 Hypothalamus GGGGGGTCTG (2) 1.8 0.0018 Hypothalamus TGTGTGCGAG (8) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina AAAAAGACTC (5) 7.5 0.0075 E12.5 retina AAGAGGGAAG (4) 3.8 0.0038 E12.5 retina AGAGTGAGGA (3) 3.8 0.0038 E12.5 retina GCAGCAGCAG (5) 3.8 0.0038 E12.5 retina GTTACACAGA (4) 3.8 0.0038 E12.5 retina CACACACAAT (3) 1.9 0.0019 E12.5 retina CCTGTGTAAC (2) 1.9 0.0019 E12.5 retina CTTTTAATCC (33) 1.9 0.0019 E12.5 retina GAGAGTGAGG (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina GAGTGATTAT (2) 10.9 0.0109 E14.5 retina AAGAGGGAAG (4) 5.5 0.0055 E14.5 retina CTTTTAATCC (33) 1.8 0.0018 E14.5 retina GGGGGGTCTG (2) 1.8 0.0018 E14.5 retina GTTACACAGA (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina GAGTGATTAT (2) 10.9 0.0109 E16.5 retina CTTTTAATCC (33) 7.2 0.0072 E16.5 retina AGAGTGAGGA (3) 3.6 0.0036 E16.5 retina GCAACAGCAG (4) 1.8 0.0018 E16.5 retina GCAGCAGCAG (5) 1.8 0.0018 E16.5 retina GCCCTCCTCC (11) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina GAGTGATTAT (2) 7.3 0.0073 E18.5 retina AGAGTGAGGA (3) 1.8 0.0018 E18.5 retina CACACACAAT (3) 1.8 0.0018 E18.5 retina GGGGGGTCTG (2) 1.8 0.0018 E18.5 retina GTTACACAGA (4) 1.8 0.0018 E18.5 retina TGTGTGTGGG (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina GAGTGATTAT (2) 17.7 0.0177 P0.5 retina AGAGTGAGGA (3) 5.9 0.0059 P0.5 retina AAGAGGGAAG (4) 3.9 0.0039 P0.5 retina CACACACAAT (3) 2 0.002 P0.5 retina GGGGGGTCTG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina GAGTGATTAT (2) 10.6 0.0106 P2.5 retina AAGAGGGAAG (4) 5.3 0.0053 P2.5 retina CCTGTGTAAC (2) 3.5 0.0035 P2.5 retina CTCTGGTCAC (2) 3.5 0.0035 P2.5 retina AATTTCTCTG (2) 1.8 0.0018 P2.5 retina CACACACAAT (3) 1.8 0.0018 P2.5 retina GCAACAGCAG (4) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina GAGTGATTAT (2) 5.9 0.0059 P4.5 retina AAGAGGGAAG (4) 2 0.002 P4.5 retina AATTTCTCTG (2) 2 0.002 P4.5 retina AGAGTGAGGA (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina GAGTGATTAT (2) 16.7 0.0167 P6.5 retina AGAGTGAGGA (3) 5 0.005 P6.5 retina AATTTCTCTG (2) 1.7 0.0017 P6.5 retina GAGAGTGAGG (3) 1.7 0.0017 P6.5 retina TGTGTGCGAG (8) 1.7 0.0017 P6.5 retina TGTGTGTGGG (2) 1.7 0.0017 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGAGTGAGGA (3) 7.4 0.0074 P10.5 crx- retina GAGTGATTAT (2) 7.4 0.0074 P10.5 crx- retina CTTTTAATCC (33) 3.7 0.0037 P10.5 crx- retina CACACACAAT (3) 1.9 0.0019 P10.5 crx- retina CCTGTGTAAC (2) 1.9 0.0019 P10.5 crx- retina GAGAGTGAGG (3) 1.9 0.0019 P10.5 crx- retina TGTGTGCGAG (8) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina GAGTGATTAT (2) 3.8 0.0038 P10.5 crx+ retina CTCTGGTCAC (2) 1.9 0.0019 P10.5 crx+ retina GCAACAGCAG (4) 1.9 0.0019 P10.5 crx+ retina GCAGCAGCAG (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal GAGTGATTAT (2) 5.6 0.0056 Adult retinal CTTTTAATCC (33) 3.7 0.0037 Adult retinal GGGGGGTCTG (2) 3.7 0.0037 Adult retinal AGAGTGAGGA (3) 1.9 0.0019 Adult retinal CACACACAAT (3) 1.9 0.0019 Adult retinal GCCCTCCTCC (11) 1.9 0.0019 Adult retinal TGTGTGCGAG (8) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TGTGTGTGTG (115) 23 0.023 ONL AGAGTGAGGA (3) 9.6 0.0096 ONL CTTTTAATCC (33) 5.7 0.0057 ONL CTCTGGTCAC (2) 1.9 0.0019 ONL GAGAGTGAGG (3) 1.9 0.0019 ONL GAGTGATTAT (2) 1.9 0.0019 ONL GCAGCAGCAG (5) 1.9 0.0019 ONL GTTACACAGA (4) 1.9 0.0019