Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.256509	Msx1	homeo box, msh-like 1	5	5 21.0 cM	17701
Gene Ontology	development | DNA binding | forebrain development | midbrain development | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	MSX1[msh homeo box homolog 1 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGGTGCTTC (8) 21.2 0.0212 P8 Cb GC CTGCTGCTTC (4) 4.9 0.0049 Cb medulloblastoma TTGGTGCTTC (8) 2.3 0.0023 P8 GC+1d culture TTGGTGCTTC (8) 11.4 0.0114 P8 GC+1d culture CTGCTGCTTC (4) 3.4 0.0034 P8 GC+1d culture CTGGTGCTTC 1.1 0.0011 P8 GC+1d culture TCCTGCCTGG (11) 1.1 0.0011 P8 GC+SHH+1d culture TTGGTGCTTC (8) 9.4 0.0094 P8 GC+SHH+1d culture CTGCTGCTTC (4) 4.7 0.0047 P8 GC+SHH+1d culture CTGGTGCTTC 2.3 0.0023 3T3 fibroblasts CTGCTGCTTC (4) 14 0.014 E15 cortex TCCTGCCTGG (11) 9.9 0.0099 E15 cortex TTGGTGCTTC (8) 4.9 0.0049 P1 cortex CTGCTGCTTC (4) 4.5 0.0045 Hypothalamus TTGGTGCTTC (8) 5.4 0.0054 Hypothalamus CTGGTGCTTC 1.8 0.0018 E12.5 retina CTGCTGCTTC (4) 11.3 0.0113 E12.5 retina TTGGTGCTTC (8) 5.6 0.0056 E14.5 retina TTGGTGCTTC (8) 12.8 0.0128 E14.5 retina CTGCTGCTTC (4) 3.6 0.0036 E16.5 retina TTGGTGCTTC (8) 12.7 0.0127 E16.5 retina CTGCTGCTTC (4) 3.6 0.0036 E18.5 retina CTGCTGCTTC (4) 12.7 0.0127 E18.5 retina AAGAACTCCC (4) 1.8 0.0018 P0.5 retina CTGCTGCTTC (4) 9.8 0.0098 P0.5 retina TTGGTGCTTC (8) 7.9 0.0079 P0.5 retina TCCTGCCTGG (11) 2 0.002 P2.5 retina TTGGTGCTTC (8) 12.3 0.0123 P2.5 retina CTGCTGCTTC (4) 10.6 0.0106 P2.5 retina CTGGTGCTTC 1.8 0.0018 P4.5 retina TTGGTGCTTC (8) 11.9 0.0119 P4.5 retina CTGCTGCTTC (4) 4 0.004 P6.5 retina CTGCTGCTTC (4) 10 0.01 P6.5 retina TTGGTGCTTC (8) 6.7 0.0067 P10.5 crx- retina TTGGTGCTTC (8) 9.3 0.0093 P10.5 crx- retina CTGCTGCTTC (4) 3.7 0.0037 P10.5 crx+ retina CTGCTGCTTC (4) 3.8 0.0038 P10.5 crx+ retina TTGGTGCTTC (8) 3.8 0.0038 Adult retinal CTGCTGCTTC (4) 7.4 0.0074 Adult retinal TTGGTGCTTC (8) 5.6 0.0056 ONL AAGAACTCCC (4) 9.6 0.0096 ONL TTGGTGCTTC (8) 1.9 0.0019