Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.256765	Ube2d3	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	3		66105
Mm.256765	Nfkb1	nuclear factor of kappa light chain gene enhancer in B-cells 1, p105	3	3 68.9 cM	18033
Gene Ontology	apoptosis | DNA binding | lymph gland development | negative regulation of interleukin-12 biosynthesis | negative regulation of transcription, DNA-dependent | nucleus | nucleus | protein binding | regulation of transcription, DNA-dependent | signal transduction | specific transcriptional repressor activity | transcription factor activity
Human Homolog	NFKB1[nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTACAATCAG (2) 3.3 0.0033 P8 Cb GC CTACGATCAG (3) 1.6 0.0016 P8 Cb GC TTTTTAAATG (4) 1.6 0.0016 Cb medulloblastoma CTACAATCAG (2) 2.3 0.0023 Cb medulloblastoma TTTTTAAATG (4) 2.3 0.0023 P8 GC+1d culture TTTTTAAATG (4) 5.7 0.0057 P8 GC+1d culture CTACAATCAG (2) 3.4 0.0034 P8 GC+1d culture GCGCTCGCTC (3) 2.3 0.0023 P8 GC+1d culture GGCTTACCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture TTTTTAAATG (4) 3.5 0.0035 P8 GC+SHH+1d culture CTACAATCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGCTTACCCC (3) 1.2 0.0012 E15 cortex TCTGCTGCTG (6) 4.9 0.0049 P1 cortex TTTTTAAATG (4) 13.6 0.0136 E12.5 retina TTTTTAAATG (4) 5.6 0.0056 E14.5 retina TTTTTAAATG (4) 10.9 0.0109 E14.5 retina TCTGCTGCTG (6) 3.6 0.0036 E14.5 retina TTGACCAAAA (3) 1.8 0.0018 E16.5 retina TTGACCAAAA (3) 1.8 0.0018 E16.5 retina TTTTTAAATG (4) 1.8 0.0018 E18.5 retina TTTTTAAATG (4) 9.1 0.0091 E18.5 retina CTACAATCAG (2) 1.8 0.0018 P0.5 retina TTTTTAAATG (4) 5.9 0.0059 P0.5 retina CTACAATCAG (2) 2 0.002 P0.5 retina GCGCTCGCTC (3) 2 0.002 P2.5 retina CTACAATCAG (2) 1.8 0.0018 P2.5 retina TTTTTAAATG (4) 1.8 0.0018 P4.5 retina TTTTTAAATG (4) 11.9 0.0119 P6.5 retina TTTTTAAATG (4) 3.3 0.0033 P6.5 retina CTACAATCAG (2) 1.7 0.0017 P6.5 retina CTACGATCAG (3) 1.7 0.0017 P10.5 crx- retina CTACAATCAG (2) 1.9 0.0019 P10.5 crx- retina TTTTTAAATG (4) 1.9 0.0019 P10.5 crx+ retina TTGACCAAAA (3) 1.9 0.0019 P10.5 crx+ retina TTTTTAAATG (4) 1.9 0.0019 Adult retinal CTACAATCAG (2) 3.7 0.0037 Adult retinal CTACGATCAG (3) 1.9 0.0019 Adult retinal GGCTTACCCC (3) 1.9 0.0019 ONL TTGACCAAAA (3) 1.9 0.0019 ONL TTTTTAAATG (4) 1.9 0.0019