Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.25720
Clk3
CDC-like kinase 3
9
102414
Mm.25720
AI256811
expressed sequence AI256811
9
102465
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 76 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
CCAGTCTGTG
(
5
)
4.9
0.0049
P8 Cb GC
ACAAAACTTT (
5
)
1.6
0.0016
P8 Cb GC
CCCAACACTG (
5
)
1.6
0.0016
P8 Cb GC
GGTCATATGG (
4
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
CCAGTCTGTG
(
5
)
4.6
0.0046
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
CCAGTCTGTG
(
5
)
3.4
0.0034
P8 GC+1d culture
CCCAACACTG (
5
)
1.1
0.0011
P8 GC+1d culture
TGCTATCACA
(
5
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
CCAGTCTGTG
(
5
)
9.4
0.0094
P8 GC+SHH+1d culture
CCCAACACTG (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCAGCCTGC (
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGTTGGCCA
(
4
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
CCAGTCTGTG
(
5
)
7
0.007
3T3 fibroblasts
TCTGAGAGCC
(
4
)
7
0.007
3T3 fibroblasts
GCCACCAATG (
3
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
CCAGTCTGTG
(
5
)
4.5
0.0045
P1 cortex
GCCACCAATG (
3
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
ACAAAACTTT (
5
)
5.4
0.0054
Hypothalamus
CCCAACACTG (
5
)
3.6
0.0036
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
CCAGTCTGTG
(
5
)
15
0.015
E12.5 retina
ACAAAACTTT (
5
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
CCAGTCTGTG
(
5
)
5.5
0.0055
E14.5 retina
CCCAACACTG (
5
)
1.8
0.0018
E14.5 retina
GCCACCAATG (
3
)
1.8
0.0018
E14.5 retina
TGGTTGGCCA
(
4
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
CCAGTCTGTG
(
5
)
14.5
0.0145
E16.5 retina
ACAAAACTTT (
5
)
1.8
0.0018
E16.5 retina
TCTGAGAGCC
(
4
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
CCAGTCTGTG
(
5
)
12.7
0.0127
E18.5 retina
TGGTTGGCCA
(
4
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
CCAGTCTGTG
(
5
)
9.8
0.0098
P0.5 retina
ACAAAACTTT (
5
)
2
0.002
P0.5 retina
CCCAACACTG (
5
)
2
0.002
P0.5 retina
TGCTATCACA
(
5
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
CCCAACACTG (
5
)
7
0.007
P2.5 retina
CCAGTCTGTG
(
5
)
5.3
0.0053
P2.5 retina
ACAAAACTTT (
5
)
1.8
0.0018
P2.5 retina
TGGTTGGCCA
(
4
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
CCAGTCTGTG
(
5
)
15.9
0.0159
P4.5 retina
CCCAACACTG (
5
)
2
0.002
P4.5 retina
TGCTATCACA
(
5
)
2
0.002
P4.5 retina
TGGTTGGCCA
(
4
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
CCAGTCTGTG
(
5
)
11.7
0.0117
P6.5 retina
CCCAACACTG (
5
)
3.3
0.0033
P6.5 retina
TGGTTGGCCA
(
4
)
3.3
0.0033
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
CCAGTCTGTG
(
5
)
1.9
0.0019
P10.5 crx- retina
CCCAACACTG (
5
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
CCAGTCTGTG
(
5
)
13.5
0.0135
P10.5 crx+ retina
CCCAACACTG (
5
)
3.8
0.0038
P10.5 crx+ retina
TGCAGCCTGC (
2
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
CCAGTCTGTG
(
5
)
7.4
0.0074
Adult retinal
CCCAACACTG (
5
)
1.9
0.0019
Adult retinal
GGTCATATGG (
4
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
CCAGTCTGTG
(
5
)
1.9
0.0019
ONL
GGTCATATGG (
4
)
1.9
0.0019
ONL
TCTGAGAGCC
(
4
)
1.9
0.0019
