Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.257316	Chm	choroidermia	X	X 96.5 cM	12662
Gene Ontology	blood vessel development | GTPase activator activity | intracellular protein transport | Rab escort protein activity | Rab GTPase activator activity | RAB-protein geranylgeranyltransferase activity | Rab-protein geranylgeranyltransferase complex | regulation of GTPase activity
Human Homolog	CHM[choroideremia (Rab escort protein 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 43 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCAGCGTA 4.9 0.0049 P8 Cb GC AAATAAAAAA (11) 3.3 0.0033 P8 Cb GC AGTCTATAAT 1.6 0.0016 Cb medulloblastoma AAATAAAAAA (11) 4.6 0.0046 Cb medulloblastoma AGTCTATAAT 2.3 0.0023 Cb medulloblastoma GCCCAGCGTA 2.3 0.0023 P8 GC+1d culture AGTCTATAAT 1.1 0.0011 P8 GC+1d culture GAGGAGAAAG (5) 1.1 0.0011 P8 GC+SHH+1d culture AAATAAAAAA (11) 7 0.007 P8 GC+SHH+1d culture AGTCTATAAT 2.3 0.0023 P8 GC+SHH+1d culture GCCCAGCGTA 1.2 0.0012 3T3 fibroblasts GCCCAGCGTA 3.5 0.0035 E15 cortex GCCCAGCGTA 4.9 0.0049 P1 cortex AAATAAAAAA (11) 4.5 0.0045 Hypothalamus AAATAAAAAA (11) 7.2 0.0072 Hypothalamus AGTCTATAAT 5.4 0.0054 E12.5 retina AAATAAAAAA (11) 1.9 0.0019 E14.5 retina AAATAAAAAA (11) 5.5 0.0055 E14.5 retina GCCCAGCGTA 1.8 0.0018 E16.5 retina AAATAAAAAA (11) 1.8 0.0018 E18.5 retina AAATAAAAAA (11) 9.1 0.0091 E18.5 retina AGTCTATAAT 1.8 0.0018 E18.5 retina GAGGAGAAAG (5) 1.8 0.0018 E18.5 retina GCCCAGCGTA 1.8 0.0018 P0.5 retina GCCCAGCGTA 2 0.002 P2.5 retina AAATAAAAAA (11) 5.3 0.0053 P2.5 retina AGTCTATAAT 3.5 0.0035 P2.5 retina GCCCAGCGTA 3.5 0.0035 P4.5 retina AAATAAAAAA (11) 5.9 0.0059 P4.5 retina AGTCTATAAT 2 0.002 P4.5 retina GAGGAGAAAG (5) 2 0.002 P4.5 retina GCCCAGCGTA 2 0.002 P6.5 retina AAATAAAAAA (11) 8.3 0.0083 P6.5 retina AGTCTATAAT 1.7 0.0017 P6.5 retina GCCCAGCGTA 1.7 0.0017 P10.5 crx- retina AAATAAAAAA (11) 3.7 0.0037 P10.5 crx- retina AGTCTATAAT 1.9 0.0019 P10.5 crx- retina GAGGAGAAAG (5) 1.9 0.0019 P10.5 crx+ retina AAATAAAAAA (11) 1.9 0.0019 P10.5 crx+ retina GCCCAGCGTA 1.9 0.0019 Adult retinal AAATAAAAAA (11) 1.9 0.0019 ONL AAATAAAAAA (11) 3.8 0.0038 ONL AGTCTATAAT 1.9 0.0019