Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.257765	Clic4	chloride intracellular channel 4 (mitochondrial)	4		29876
Gene Ontology	chloride channel activity | chloride transport | integral to membrane | ion channel activity | ion transport | membrane | mitochondrion | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLIC4[chloride intracellular channel 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAGAGCGTT 3.3 0.0033 P8 Cb GC TAGATAGCAT 3.3 0.0033 P8 Cb GC AAAAAAATAA (7) 1.6 0.0016 P8 Cb GC AACACACAGT (3) 1.6 0.0016 P8 Cb GC AACGGCTTAA 1.6 0.0016 P8 Cb GC CTGGCCTTGG (4) 1.6 0.0016 P8 Cb GC TCAGTCCCCA 1.6 0.0016 P8 Cb GC TTCAAGAATG (4) 1.6 0.0016 Cb medulloblastoma AAAAAAATAA (7) 13.9 0.0139 Cb medulloblastoma AGAGAGCGTT 4.6 0.0046 Cb medulloblastoma CTTTCCCCTA (2) 4.6 0.0046 Cb medulloblastoma AACACACAGT (3) 2.3 0.0023 Cb medulloblastoma AACGGCTTAA 2.3 0.0023 Cb medulloblastoma AAGATTTTGT (2) 2.3 0.0023 Cb medulloblastoma AGGCAAAAAA (5) 2.3 0.0023 Cb medulloblastoma TGGGTGTTGG (8) 2.3 0.0023 Cb medulloblastoma TTTTTAAAAA (5) 2.3 0.0023 P8 GC+1d culture AGAGAGCGTT 5.7 0.0057 P8 GC+1d culture TTTTTAAAAA (5) 3.4 0.0034 P8 GC+1d culture AAAAAAATAA (7) 2.3 0.0023 P8 GC+1d culture CTTTCCCCTA (2) 2.3 0.0023 P8 GC+1d culture CAACTCTGAG (2) 1.1 0.0011 P8 GC+1d culture CTGGCCTTGG (4) 1.1 0.0011 P8 GC+1d culture GGCCGACATC 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAATAA (7) 10.5 0.0105 P8 GC+SHH+1d culture TAGATAGCAT 5.9 0.0059 P8 GC+SHH+1d culture AGAGAGCGTT 4.7 0.0047 P8 GC+SHH+1d culture CTTTCCCCTA (2) 3.5 0.0035 P8 GC+SHH+1d culture AACACACAGT (3) 2.3 0.0023 P8 GC+SHH+1d culture TGGGTGTTGG (8) 1.2 0.0012 P8 GC+SHH+1d culture TTCAAGAATG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTTTTAAAAA (5) 1.2 0.0012 3T3 fibroblasts AGAGAGCGTT 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TGGGTGTTGG (8) 3.5 0.0035 E15 cortex AACACACAGT (3) 4.9 0.0049 E15 cortex AGAGAGCGTT 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGACAACTGG (4) 4.9 0.0049 P1 cortex AAAAAAATAA (7) 4.5 0.0045 P1 cortex AACACACAGT (3) 4.5 0.0045 Hypothalamus AAAAAAATAA (7) 18.1 0.0181 Hypothalamus CTTTCCCCTA (2) 3.6 0.0036 Hypothalamus TAAATGAATC (2) 3.6 0.0036 Hypothalamus TAGATAGCAT 1.8 0.0018 Hypothalamus TCAGTCCCCA 1.8 0.0018 E12.5 retina AAAAAAATAA (7) 3.8 0.0038 E12.5 retina AGAGAGCGTT 1.9 0.0019 E12.5 retina CTTTCCCCTA (2) 1.9 0.0019 E12.5 retina TAGATAGCAT 1.9 0.0019 E12.5 retina TGGGTGTTGG (8) 1.9 0.0019 E12.5 retina TTCAAGAAAA (4) 1.9 0.0019 E14.5 retina AAAAAAATAA (7) 5.5 0.0055 E14.5 retina AGAGAGCGTT 5.5 0.0055 E14.5 retina TGACAACTGG (4) 1.8 0.0018 E16.5 retina AAAAAAATAA (7) 10.9 0.0109 E16.5 retina AAGATTTTGT (2) 1.8 0.0018 E16.5 retina AGAGAGCGTT 1.8 0.0018 E16.5 retina CTTTCCCCTA (2) 1.8 0.0018 E16.5 retina TGGGTGTTGG (8) 1.8 0.0018 E18.5 retina AAAAAAATAA (7) 3.6 0.0036 E18.5 retina TAGATAGCAT 3.6 0.0036 E18.5 retina GGCCGACATC 1.8 0.0018 E18.5 retina GGGGGAAGGG (8) 1.8 0.0018 E18.5 retina TAAATGAATC (2) 1.8 0.0018 E18.5 retina TGGGTGTTGG (8) 1.8 0.0018 P0.5 retina AGAGAGCGTT 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TAGATAGCAT 2 0.002 P2.5 retina AGAGAGCGTT 8.8 0.0088 P2.5 retina TAGATAGCAT 7 0.007 P2.5 retina TAAATGAATC (2) 3.5 0.0035 P2.5 retina AAAAAAATAA (7) 1.8 0.0018 P2.5 retina AACACACAGT (3) 1.8 0.0018 P2.5 retina CAACTCTGAG (2) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGGGTGTTGG (8) 1.8 0.0018 P4.5 retina AAAAAAATAA (7) 9.9 0.0099 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAAATGAATC (2) 2 0.002 P4.5 retina TAGATAGCAT 2 0.002 P6.5 retina AAAAAAATAA (7) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AACGGCTTAA 1.7 0.0017 P6.5 retina TAAATGAATC (2) 1.7 0.0017 P6.5 retina TGACAACTGG (4) 1.7 0.0017 P10.5 crx- retina AACACACAGT (3) 3.7 0.0037 P10.5 crx- retina AGAGAGCGTT 3.7 0.0037 P10.5 crx- retina CAACTCTGAG (2) 1.9 0.0019 P10.5 crx- retina GGGGGAAGGG (8) 1.9 0.0019 P10.5 crx- retina TAAATGAATC (2) 1.9 0.0019 P10.5 crx+ retina AACACACAGT (3) 11.5 0.0115 P10.5 crx+ retina GGGGGAAGGG (8) 3.8 0.0038 P10.5 crx+ retina AGAGAGCGTT 1.9 0.0019 P10.5 crx+ retina TTCAAGAAAA (4) 1.9 0.0019 P10.5 crx+ retina TTTTTAAAAA (5) 1.9 0.0019 Adult retinal AACACACAGT (3) 24.1 0.0241 Adult retinal AAAAAAATAA (7) 5.6 0.0056 Adult retinal CTGGCCTTGG (4) 3.7 0.0037 Adult retinal TTTTTAAAAA (5) 3.7 0.0037 Adult retinal AACGGCTTAA 1.9 0.0019 Adult retinal AGAGAGCGTT 1.9 0.0019 Adult retinal AGGCAAAAAA (5) 1.9 0.0019 Adult retinal GGGGGAAGGG (8) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TCAGTCCCCA 1.9 0.0019 ONL AACACACAGT (3) 11.5 0.0115 ONL AAAAAAATAA (7) 9.6 0.0096 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AGGCAAAAAA (5) 3.8 0.0038 ONL AAGATTTTGT (2) 1.9 0.0019 ONL TTTTTAAAAA (5) 1.9 0.0019