Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.258637
Vti1a
vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
19
53611
Mm.258637
2310066F23Rik
RIKEN cDNA 2310066F23 gene
19
70409
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 47 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTGAAAAAAA (
22
)
4.9
0.0049
Cb medulloblastoma
GTGAAAAAAA (
22
)
43.9
0.0439
Cb medulloblastoma
CACACATTCA (
8
)
4.6
0.0046
Cb medulloblastoma
CACACACTCA
(
6
)
2.3
0.0023
P8 GC+1d culture
GTGAAAAAAA (
22
)
6.8
0.0068
P8 GC+1d culture
CAGACTAAAC
(
2
)
3.4
0.0034
P8 GC+SHH+1d culture
GTGAAAAAAA (
22
)
10.5
0.0105
P8 GC+SHH+1d culture
CACACACTCA
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTCATTTGA
(
3
)
1.2
0.0012
3T3 fibroblasts
CGGGGCGAGC
(
5
)
3.5
0.0035
E15 cortex
ACAGAGAAAA
(
6
)
4.9
0.0049
P1 cortex
CAGACTAAAC
(
2
)
4.5
0.0045
P1 cortex
CGGGGCGAGC
(
5
)
4.5
0.0045
Hypothalamus
GTGAAAAAAA (
22
)
18.1
0.0181
Hypothalamus
CACACACTCA
(
6
)
1.8
0.0018
E12.5 retina
GTGAAAAAAA (
22
)
11.3
0.0113
E12.5 retina
CACACACTCA
(
6
)
1.9
0.0019
E14.5 retina
GTGAAAAAAA (
22
)
12.8
0.0128
E14.5 retina
GGAAAGAACA
(
4
)
1.8
0.0018
E14.5 retina
TTTCATTTGA
(
3
)
1.8
0.0018
E16.5 retina
GTGAAAAAAA (
22
)
5.4
0.0054
E18.5 retina
GTGAAAAAAA (
22
)
20
0.02
E18.5 retina
CAGACTAAAC
(
2
)
3.6
0.0036
P0.5 retina
GTGAAAAAAA (
22
)
7.9
0.0079
P0.5 retina
CACACACTCA
(
6
)
2
0.002
P2.5 retina
GTGAAAAAAA (
22
)
10.6
0.0106
P2.5 retina
ACAGAGAAAA
(
6
)
1.8
0.0018
P2.5 retina
CACACATTCA (
8
)
1.8
0.0018
P2.5 retina
CAGACTAAAC
(
2
)
1.8
0.0018
P4.5 retina
GTGAAAAAAA (
22
)
23.8
0.0238
P4.5 retina
ACAGAGAAAA
(
6
)
2
0.002
P4.5 retina
CACACATTCA (
8
)
2
0.002
P6.5 retina
GTGAAAAAAA (
22
)
5
0.005
P10.5 crx- retina
CACACACTCA
(
6
)
3.7
0.0037
P10.5 crx- retina
CACACATTCA (
8
)
3.7
0.0037
P10.5 crx- retina
GTGAAAAAAA (
22
)
3.7
0.0037
P10.5 crx- retina
CAGACTAAAC
(
2
)
1.9
0.0019
P10.5 crx+ retina
CACACACTCA
(
6
)
5.8
0.0058
P10.5 crx+ retina
GTGAAAAAAA (
22
)
5.8
0.0058
P10.5 crx+ retina
CAGACTAAAC
(
2
)
1.9
0.0019
P10.5 crx+ retina
TTTCATTTGA
(
3
)
1.9
0.0019
Adult retinal
CACACACTCA
(
6
)
7.4
0.0074
Adult retinal
GGAAAGAACA
(
4
)
3.7
0.0037
Adult retinal
GTGAAAAAAA (
22
)
3.7
0.0037
ONL
GTGAAAAAAA (
22
)
5.7
0.0057
ONL
CACACACTCA
(
6
)
1.9
0.0019
ONL
CGGGGCGAGC
(
5
)
1.9
0.0019
