Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.258923	B230337F23Rik	RIKEN cDNA B230337F23 gene	7		320598
Mm.258923	Nucb1	nucleobindin 1	7		18220
Gene Ontology	calcium ion binding | DNA binding | Golgi apparatus
Human Homolog	NUCB1[nucleobindin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GCCTCCTGGG (10) 4.9 0.0049 P8 Cb GC GAGAAACCCT (8) 3.3 0.0033 P8 Cb GC GCCCCAGGAG (3) 3.3 0.0033 P8 Cb GC AAAACCCTTC (2) 1.6 0.0016 P8 Cb GC AAATAAAGTG (5) 1.6 0.0016 P8 Cb GC ATGATGTGCA (3) 1.6 0.0016 P8 Cb GC CAAGCCCTAG (3) 1.6 0.0016 P8 Cb GC GGAACCAGAA (7) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GAGAAACCCT (8) 4.6 0.0046 Cb medulloblastoma GGAACAGAAA (2) 4.6 0.0046 Cb medulloblastoma GGAACCAGAA (7) 2.3 0.0023 Cb medulloblastoma TGTGCTAATA (4) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GCCTCCTGGG (10) 9.1 0.0091 P8 GC+1d culture GCCCCAGGAG (3) 8 0.008 P8 GC+1d culture ATGATGTGCA (3) 3.4 0.0034 P8 GC+1d culture GGAACAGAAA (2) 2.3 0.0023 P8 GC+1d culture AAAACCCTTC (2) 1.1 0.0011 P8 GC+1d culture AAATAAAGTG (5) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GCCTCCTGGG (10) 8.2 0.0082 P8 GC+SHH+1d culture GCCCCAGGAG (3) 5.9 0.0059 P8 GC+SHH+1d culture ATGATGTGCA (3) 2.3 0.0023 P8 GC+SHH+1d culture CAAGCCCTAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTGCTAATA (4) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GCCCCAGGAG (3) 31.5 0.0315 3T3 fibroblasts GCCTCCTGGG (10) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex AAAACCCTTC (2) 4.9 0.0049 E15 cortex ATGATGTGCA (3) 4.9 0.0049 E15 cortex GCCCCAGGAG (3) 4.9 0.0049 E15 cortex GCCTCCTGGG (10) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex ATGATGTGCA (3) 9.1 0.0091 P1 cortex GAGAAACCCT (8) 4.5 0.0045 P1 cortex GCCCCAGGAG (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GAGAAACCCT (8) 3.6 0.0036 Hypothalamus GCCCCAGGAG (3) 3.6 0.0036 Hypothalamus TGTGCTAATA (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GCCTCCTGGG (10) 11.3 0.0113 E12.5 retina GGAACAGAAA (2) 7.5 0.0075 E12.5 retina ATGATGTGCA (3) 1.9 0.0019 E12.5 retina CAAGAACAGA (5) 1.9 0.0019 E12.5 retina GAGAAACCCT (8) 1.9 0.0019 E12.5 retina GCCCCAGGAG (3) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GCCTCCTGGG (10) 10.9 0.0109 E14.5 retina GGAACAGAAA (2) 5.5 0.0055 E14.5 retina GAGAAACCCT (8) 3.6 0.0036 E14.5 retina CAAGCCCTAG (3) 1.8 0.0018 E14.5 retina GCCCCAGGAG (3) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GCCTCCTGGG (10) 7.2 0.0072 E16.5 retina GAGAAACCCT (8) 3.6 0.0036 E16.5 retina ATGATGTGCA (3) 1.8 0.0018 E16.5 retina CAAGAACAGA (5) 1.8 0.0018 E16.5 retina GCCCCAGGAG (3) 1.8 0.0018 E16.5 retina TGTGCTAATA (4) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GCCCCAGGAG (3) 5.5 0.0055 E18.5 retina ATGATGTGCA (3) 1.8 0.0018 E18.5 retina GAGAAACCCT (8) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCCCCAGGAG (3) 7.9 0.0079 P0.5 retina GCCTCCTGGG (10) 3.9 0.0039 P0.5 retina ATGATGTGCA (3) 2 0.002 P0.5 retina GAGAAACCCT (8) 2 0.002 P0.5 retina TGTGCTAATA (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GAGAAACCCT (8) 8.8 0.0088 P2.5 retina GCCCCAGGAG (3) 5.3 0.0053 P2.5 retina TGTGCTAATA (4) 3.5 0.0035 P2.5 retina ATGATGTGCA (3) 1.8 0.0018 P2.5 retina GCCTCCTGGG (10) 1.8 0.0018 P2.5 retina GGAACAGAAA (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GCCCCAGGAG (3) 7.9 0.0079 P4.5 retina GAGAAACCCT (8) 5.9 0.0059 P4.5 retina AAATAAAGTG (5) 2 0.002 P4.5 retina CAAGAACAGA (5) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GCCTCCTGGG (10) 5 0.005 P6.5 retina GAGAAACCCT (8) 3.3 0.0033 P6.5 retina GGAACAGAAA (2) 3.3 0.0033 P6.5 retina GCCCCAGGAG (3) 1.7 0.0017 P6.5 retina TGTGCTAATA (4) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GCCTCCTGGG (10) 11.1 0.0111 P10.5 crx- retina ATGATGTGCA (3) 3.7 0.0037 P10.5 crx- retina GAGAAACCCT (8) 1.9 0.0019 P10.5 crx- retina GCCCCAGGAG (3) 1.9 0.0019 P10.5 crx- retina GGAACCAGAA (7) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GCCTCCTGGG (10) 5.8 0.0058 P10.5 crx+ retina GAGAAACCCT (8) 3.8 0.0038 P10.5 crx+ retina GCCCCAGGAG (3) 3.8 0.0038 P10.5 crx+ retina ATGATGTGCA (3) 1.9 0.0019 P10.5 crx+ retina GGAACAGAAA (2) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GCCCCAGGAG (3) 7.4 0.0074 Adult retinal ATGATGTGCA (3) 5.6 0.0056 Adult retinal GCCTCCTGGG (10) 5.6 0.0056 Adult retinal GGAACAGAAA (2) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GAGAAACCCT (8) 5.7 0.0057 ONL ATGATGTGCA (3) 1.9 0.0019 ONL GCCCCAGGAG (3) 1.9 0.0019 ONL GCCTCCTGGG (10) 1.9 0.0019