Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.258927
Eef1d
eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
15
66656
Mm.258927
1700026P12Rik
RIKEN cDNA 1700026P12 gene
15
76576
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 127 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACAAACGGT (
5
)
192.5
0.1925
P8 Cb GC
TGTGTGAGGA
(
6
)
44
0.044
P8 Cb GC
CTCCTCAAAT (
6
)
24.5
0.0245
P8 Cb GC
AGCAGATGAA (
5
)
1.6
0.0016
P8 Cb GC
CTGTGGGGGG (
6
)
1.6
0.0016
P8 Cb GC
GCCCAGCTAG
(
2
)
1.6
0.0016
P8 Cb GC
GTCCTCAAAT
(
5
)
1.6
0.0016
P8 Cb GC
TTGTGAGCTG (
4
)
1.6
0.0016
Cb medulloblastoma
CACAAACGGT (
5
)
101.7
0.1017
Cb medulloblastoma
TGTGTGAGGA
(
6
)
23.1
0.0231
Cb medulloblastoma
CTCCTCAAAT (
6
)
11.6
0.0116
Cb medulloblastoma
CTGTGGGGGG (
6
)
2.3
0.0023
Cb medulloblastoma
TGTGTGGAGG (
8
)
2.3
0.0023
Cb medulloblastoma
TTGCAGAAGT
(
2
)
2.3
0.0023
P8 GC+1d culture
CACAAACGGT (
5
)
110.7
0.1107
P8 GC+1d culture
TGTGTGAGGA
(
6
)
28.5
0.0285
P8 GC+1d culture
CTCCTCAAAT (
6
)
14.8
0.0148
P8 GC+1d culture
TGCCCAGGGC (
7
)
4.6
0.0046
P8 GC+1d culture
CTGTGGGGGG (
6
)
2.3
0.0023
P8 GC+1d culture
GCCCAGCTAG
(
2
)
1.1
0.0011
P8 GC+1d culture
TCAGCTCTCA (
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CACAAACGGT (
5
)
118.3
0.1183
P8 GC+SHH+1d culture
CTCCTCAAAT (
6
)
26.9
0.0269
P8 GC+SHH+1d culture
TGTGTGAGGA
(
6
)
26.9
0.0269
P8 GC+SHH+1d culture
TGCCCAGGGC (
7
)
3.5
0.0035
P8 GC+SHH+1d culture
TTGTGAGCTG (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
AGCAGATGAA (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
CATATCTGCC
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCAGCTTAG (
4
)
1.2
0.0012
3T3 fibroblasts
CACAAACGGT (
5
)
150.7
0.1507
3T3 fibroblasts
TGTGTGAGGA
(
6
)
56.1
0.0561
3T3 fibroblasts
CTCCTCAAAT (
6
)
7
0.007
3T3 fibroblasts
GGCACAGGGG (
6
)
3.5
0.0035
3T3 fibroblasts
TCAGCTCTCA (
3
)
3.5
0.0035
E15 cortex
CACAAACGGT (
5
)
69.3
0.0693
E15 cortex
TGTGTGAGGA
(
6
)
29.7
0.0297
E15 cortex
CTCCTCAAAT (
6
)
24.7
0.0247
E15 cortex
CTGTGGGGGG (
6
)
4.9
0.0049
E15 cortex
GTGGGGGGGG (
19
)
4.9
0.0049
P1 cortex
CACAAACGGT (
5
)
86.4
0.0864
P1 cortex
TGTGTGAGGA
(
6
)
13.6
0.0136
P1 cortex
CTCCTCAAAT (
6
)
9.1
0.0091
P1 cortex
GGCACAGGGG (
6
)
4.5
0.0045
P1 cortex
TTGTGAGCTG (
4
)
4.5
0.0045
Hypothalamus
CACAAACGGT (
5
)
54.3
0.0543
Hypothalamus
TGTGTGAGGA
(
6
)
19.9
0.0199
Hypothalamus
CTCCTCAAAT (
6
)
3.6
0.0036
Hypothalamus
GCCAGCTTAG (
4
)
1.8
0.0018
Hypothalamus
GTCCTCAAAT
(
5
)
1.8
0.0018
Hypothalamus
TGCCCAGGGC (
7
)
1.8
0.0018
Hypothalamus
TTGTGAGCTG (
4
)
1.8
0.0018
E12.5 retina
CACAAACGGT (
5
)
287.2
0.2872
E12.5 retina
TGTGTGAGGA
(
6
)
65.7
0.0657
E12.5 retina
CTCCTCAAAT (
6
)
15
0.015
E12.5 retina
CTGTGGGGGG (
6
)
1.9
0.0019
E12.5 retina
GCCCAGCTAG
(
2
)
1.9
0.0019
E12.5 retina
TTGCAGAAGT
(
2
)
1.9
0.0019
E14.5 retina
CACAAACGGT (
5
)
131.2
0.1312
E14.5 retina
TGTGTGAGGA
(
6
)
45.5
0.0455
E14.5 retina
CTCCTCAAAT (
6
)
25.5
0.0255
E14.5 retina
GGCACAGGGG (
6
)
5.5
0.0055
E14.5 retina
CTGTGGGGGG (
6
)
3.6
0.0036
E14.5 retina
TGCCCAGGGC (
7
)
3.6
0.0036
E16.5 retina
CACAAACGGT (
5
)
199.2
0.1992
E16.5 retina
CTCCTCAAAT (
6
)
47.1
0.0471
E16.5 retina
TGTGTGAGGA
(
6
)
38
0.038
E16.5 retina
AGCAGATGAA (
5
)
1.8
0.0018
E16.5 retina
CTGTGGGGGG (
6
)
1.8
0.0018
E16.5 retina
GGCACAGGGG (
6
)
1.8
0.0018
E16.5 retina
TGCCCAGGGC (
7
)
1.8
0.0018
E18.5 retina
CACAAACGGT (
5
)
120.1
0.1201
E18.5 retina
TGTGTGAGGA
(
6
)
41.8
0.0418
E18.5 retina
CTCCTCAAAT (
6
)
34.6
0.0346
E18.5 retina
CTGTGGGGGG (
6
)
3.6
0.0036
P0.5 retina
CACAAACGGT (
5
)
233.5
0.2335
P0.5 retina
TGTGTGAGGA
(
6
)
33.4
0.0334
P0.5 retina
CTCCTCAAAT (
6
)
21.6
0.0216
P0.5 retina
CTGTGGGGGG (
6
)
9.8
0.0098
P0.5 retina
GCCCAGCTAG
(
2
)
2
0.002
P0.5 retina
TGCCCAGGGC (
7
)
2
0.002
P2.5 retina
CACAAACGGT (
5
)
119.7
0.1197
P2.5 retina
TGTGTGAGGA
(
6
)
42.2
0.0422
P2.5 retina
CTCCTCAAAT (
6
)
22.9
0.0229
P2.5 retina
TCAGCTCTCA (
3
)
3.5
0.0035
P2.5 retina
TGCCCAGGGC (
7
)
3.5
0.0035
P2.5 retina
CATATCTGCC
(
2
)
1.8
0.0018
P2.5 retina
CTGTGGGGGG (
6
)
1.8
0.0018
P2.5 retina
TTGTGAGCTG (
4
)
1.8
0.0018
P4.5 retina
CACAAACGGT (
5
)
89.2
0.0892
P4.5 retina
TGTGTGAGGA
(
6
)
45.6
0.0456
P4.5 retina
CTCCTCAAAT (
6
)
27.7
0.0277
P4.5 retina
CTGTGGGGGG (
6
)
2
0.002
P4.5 retina
GGCACAGGGG (
6
)
2
0.002
P4.5 retina
TGCCCAGGGC (
7
)
2
0.002
P4.5 retina
TTGCAGAAGT
(
2
)
2
0.002
P6.5 retina
CACAAACGGT (
5
)
93.4
0.0934
P6.5 retina
TGTGTGAGGA
(
6
)
31.7
0.0317
P6.5 retina
CTCCTCAAAT (
6
)
23.3
0.0233
P6.5 retina
CTGTGGGGGG (
6
)
6.7
0.0067
P6.5 retina
GGCACAGGGG (
6
)
1.7
0.0017
P10.5 crx- retina
CACAAACGGT (
5
)
222.9
0.2229
P10.5 crx- retina
TGTGTGAGGA
(
6
)
16.7
0.0167
P10.5 crx- retina
CTCCTCAAAT (
6
)
9.3
0.0093
P10.5 crx- retina
CTGTGGGGGG (
6
)
7.4
0.0074
P10.5 crx- retina
TGCCCAGGGC (
7
)
1.9
0.0019
P10.5 crx+ retina
CACAAACGGT (
5
)
82.7
0.0827
P10.5 crx+ retina
TGTGTGAGGA
(
6
)
19.2
0.0192
P10.5 crx+ retina
CTCCTCAAAT (
6
)
9.6
0.0096
P10.5 crx+ retina
CTGTGGGGGG (
6
)
7.7
0.0077
P10.5 crx+ retina
CATATCTGCC
(
2
)
1.9
0.0019
P10.5 crx+ retina
GCCAGCTTAG (
4
)
1.9
0.0019
P10.5 crx+ retina
GTGGGGGGGG (
19
)
1.9
0.0019
P10.5 crx+ retina
TCAGCTCTCA (
3
)
1.9
0.0019
P10.5 crx+ retina
TGCCCAGGGC (
7
)
1.9
0.0019
Adult retinal
CACAAACGGT (
5
)
50
0.05
Adult retinal
TGTGTGAGGA
(
6
)
24.1
0.0241
Adult retinal
CTCCTCAAAT (
6
)
7.4
0.0074
Adult retinal
TGCCCAGGGC (
7
)
3.7
0.0037
Adult retinal
TGTGTGGAGG (
8
)
3.7
0.0037
Adult retinal
GCCCAGCTAG
(
2
)
1.9
0.0019
Adult retinal
TTGTGAGCTG (
4
)
1.9
0.0019
ONL
CACAAACGGT (
5
)
28.7
0.0287
ONL
TGTGTGAGGA
(
6
)
19.2
0.0192
ONL
CTCCTCAAAT (
6
)
5.7
0.0057
ONL
CTGTGGGGGG (
6
)
3.8
0.0038
ONL
GTGGGGGGGG (
19
)
3.8
0.0038
ONL
GGCACAGGGG (
6
)
1.9
0.0019
