Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259021	Fxr1h	fragile X mental retardation gene 1, autosomal homolog	3		14359
Gene Ontology	costamere | muscle development | nucleic acid binding | RNA binding
Human Homolog	FXR1[fragile X mental retardation, autosomal homolog 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 115 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACGGGACCA (2) 32.6 0.0326 P8 Cb GC TGGATGGTGG (6) 3.3 0.0033 P8 Cb GC ACTGACCACA 1.6 0.0016 P8 Cb GC GGGAATGGCA (3) 1.6 0.0016 P8 Cb GC GTCCTTCAGA (5) 1.6 0.0016 P8 Cb GC TTTAGTCTTC 1.6 0.0016 Cb medulloblastoma CACGGGACCA (2) 41.6 0.0416 Cb medulloblastoma GAAAATAAAC (7) 16.2 0.0162 Cb medulloblastoma AAGAATTTGT (4) 4.6 0.0046 Cb medulloblastoma AACACAAAAA (3) 2.3 0.0023 P8 GC+1d culture CACGGGACCA (2) 26.3 0.0263 P8 GC+1d culture GAAAATAAAC (7) 4.6 0.0046 P8 GC+1d culture TTTAGTCTTC 3.4 0.0034 P8 GC+1d culture TAAGAAATTG (2) 2.3 0.0023 P8 GC+1d culture AACACAAAAA (3) 1.1 0.0011 P8 GC+SHH+1d culture CACGGGACCA (2) 28.1 0.0281 P8 GC+SHH+1d culture GAAAATAAAC (7) 4.7 0.0047 P8 GC+SHH+1d culture AGCTTTTAAA (7) 1.2 0.0012 P8 GC+SHH+1d culture CACACAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture CAGAAATCTT (3) 1.2 0.0012 P8 GC+SHH+1d culture CATACATACA (9) 1.2 0.0012 P8 GC+SHH+1d culture GTCCTTCAGA (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTAGTCTTC 1.2 0.0012 3T3 fibroblasts CACGGGACCA (2) 31.5 0.0315 3T3 fibroblasts TGGATGGTGG (6) 3.5 0.0035 3T3 fibroblasts TGTGTATACA (8) 3.5 0.0035 3T3 fibroblasts TGTGTTTTTA (3) 3.5 0.0035 3T3 fibroblasts TTTAGTCTTC 3.5 0.0035 E15 cortex CACGGGACCA (2) 39.6 0.0396 E15 cortex GAAAATAAAC (7) 4.9 0.0049 E15 cortex GGGAATGGCA (3) 4.9 0.0049 E15 cortex GTCCTTCAGA (5) 4.9 0.0049 E15 cortex TGGATGGTGG (6) 4.9 0.0049 P1 cortex CACGGGACCA (2) 18.2 0.0182 P1 cortex TGGATGGTGG (6) 9.1 0.0091 P1 cortex AAGAATTTGT (4) 4.5 0.0045 P1 cortex TTTAGTCTTC 4.5 0.0045 Hypothalamus GAAAATAAAC (7) 67 0.067 Hypothalamus CACGGGACCA (2) 25.4 0.0254 Hypothalamus TGTGTTTTTA (3) 3.6 0.0036 Hypothalamus AAGAATTTGT (4) 1.8 0.0018 Hypothalamus CACACAAAAT (4) 1.8 0.0018 Hypothalamus CAGAAATCTT (3) 1.8 0.0018 E12.5 retina CACGGGACCA (2) 15 0.015 E12.5 retina GAAAATAAAC (7) 5.6 0.0056 E12.5 retina TTTAGTCTTC 3.8 0.0038 E12.5 retina AGCTTTTAAA (7) 1.9 0.0019 E12.5 retina GTCCTTCAGA (5) 1.9 0.0019 E12.5 retina TGTGTTTTTA (3) 1.9 0.0019 E14.5 retina CACGGGACCA (2) 10.9 0.0109 E14.5 retina GAAAATAAAC (7) 5.5 0.0055 E14.5 retina CAGAAATCTT (3) 1.8 0.0018 E14.5 retina CATACATACA (9) 1.8 0.0018 E14.5 retina GTCCTTCAGA (5) 1.8 0.0018 E14.5 retina TGTGTTTTTA (3) 1.8 0.0018 E14.5 retina TTTAGTCTTC 1.8 0.0018 E16.5 retina CACGGGACCA (2) 18.1 0.0181 E16.5 retina GAAAATAAAC (7) 5.4 0.0054 E16.5 retina TGTGTTTTTA (3) 3.6 0.0036 E16.5 retina TTTAGTCTTC 1.8 0.0018 E18.5 retina CACGGGACCA (2) 16.4 0.0164 E18.5 retina GAAAATAAAC (7) 9.1 0.0091 E18.5 retina TTTAGTCTTC 5.5 0.0055 E18.5 retina ACTGACCACA 3.6 0.0036 E18.5 retina TGTGTATACA (8) 3.6 0.0036 E18.5 retina AACACAAAAA (3) 1.8 0.0018 E18.5 retina CATACATACA (9) 1.8 0.0018 P0.5 retina CACGGGACCA (2) 29.4 0.0294 P0.5 retina AGCTTTTAAA (7) 2 0.002 P0.5 retina GAAAATAAAC (7) 2 0.002 P0.5 retina GCAGGTAACA 2 0.002 P0.5 retina TAAGAAATTG (2) 2 0.002 P2.5 retina CACGGGACCA (2) 15.8 0.0158 P2.5 retina GAAAATAAAC (7) 3.5 0.0035 P2.5 retina AGCTTTTAAA (7) 1.8 0.0018 P2.5 retina CATACATACA (9) 1.8 0.0018 P2.5 retina TTTAGTCTTC 1.8 0.0018 P4.5 retina CACGGGACCA (2) 15.9 0.0159 P4.5 retina GAAAATAAAC (7) 15.9 0.0159 P4.5 retina TGTGTTTTTA (3) 4 0.004 P4.5 retina TTTAGTCTTC 4 0.004 P4.5 retina AACACAAAAA (3) 2 0.002 P4.5 retina ACTGACCACA 2 0.002 P4.5 retina CATACATACA (9) 2 0.002 P6.5 retina CACGGGACCA (2) 31.7 0.0317 P6.5 retina GAAAATAAAC (7) 6.7 0.0067 P6.5 retina TGTGTTTTTA (3) 3.3 0.0033 P6.5 retina TGGATGGTGG (6) 1.7 0.0017 P10.5 crx- retina CACGGGACCA (2) 31.6 0.0316 P10.5 crx- retina TGTGTTTTTA (3) 3.7 0.0037 P10.5 crx- retina CAGAAATCTT (3) 1.9 0.0019 P10.5 crx- retina GAAAATAAAC (7) 1.9 0.0019 P10.5 crx- retina GCAGGTAACA 1.9 0.0019 P10.5 crx- retina GTCCTTCAGA (5) 1.9 0.0019 P10.5 crx+ retina CACGGGACCA (2) 28.8 0.0288 P10.5 crx+ retina GAAAATAAAC (7) 3.8 0.0038 P10.5 crx+ retina ACTGACCACA 1.9 0.0019 P10.5 crx+ retina TGGATGGTGG (6) 1.9 0.0019 Adult retinal CACGGGACCA (2) 25.9 0.0259 Adult retinal CACACAAAAT (4) 3.7 0.0037 Adult retinal ACTGACCACA 1.9 0.0019 Adult retinal AGCTTTTAAA (7) 1.9 0.0019 Adult retinal CAGAAATCTT (3) 1.9 0.0019 Adult retinal CATACATACA (9) 1.9 0.0019 Adult retinal GCAGGTAACA 1.9 0.0019 Adult retinal TGTGTATACA (8) 1.9 0.0019 Adult retinal TGTGTTTTTA (3) 1.9 0.0019 Adult retinal TTTAGTCTTC 1.9 0.0019 ONL CACGGGACCA (2) 15.3 0.0153 ONL AACACAAAAA (3) 1.9 0.0019 ONL CATACATACA (9) 1.9 0.0019 ONL GAAAATAAAC (7) 1.9 0.0019 ONL GGGAATGGCA (3) 1.9 0.0019 ONL TGTGTTTTTA (3) 1.9 0.0019 ONL TTTAGTCTTC 1.9 0.0019