Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259829	Hdac7a	histone deacetylase 7A	15		56233
Gene Ontology	chromatin modification | cytoplasm | histone deacetylase activity | hydrolase activity | negative regulation of transcription from Pol II promoter | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription corepressor activity | transcriptional repressor activity
Human Homolog	HDAC7A[histone deacetylase 7A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CAGTCCTTTG (4) 3.3 0.0033 P8 Cb GC TTTTTGTAAA (7) 3.3 0.0033 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma TGTACACACA (8) 4.6 0.0046 Cb medulloblastoma CAGTCCTTTG (4) 2.3 0.0023 Cb medulloblastoma GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TTTTTGTAAA (7) 5.7 0.0057 P8 GC+1d culture GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture CAGCGCTTGG 1.1 0.0011 P8 GC+1d culture CATACATAGA 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GACTCACAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCCCCCC 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CAGTCCTTTG (4) 3.5 0.0035 3T3 fibroblasts GGGGGAGGGG (18) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GACTCACAAA (5) 4.9 0.0049 E15 cortex GCAGCCCCCC 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TGTACACACA (8) 9.1 0.0091 P1 cortex GGGGGAGGGG (18) 4.5 0.0045 P1 cortex TCTCCTTTCT (8) 4.5 0.0045 P1 cortex TTTTTGTAAA (7) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CAGCGCTTGG 3.6 0.0036 Hypothalamus TTTTTGTAAA (7) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TTTTTGTAAA (7) 11.3 0.0113 E12.5 retina GGGGGAGGGG (18) 3.8 0.0038 E12.5 retina GCAGCCCCCC 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TTTTTGTAAA (7) 7.3 0.0073 E14.5 retina CAGCGCTTGG 3.6 0.0036 E14.5 retina TCTCCTTTCT (8) 3.6 0.0036 E14.5 retina GACTCACAAA (5) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CAGTCCTTTG (4) 1.8 0.0018 E16.5 retina TTTTTGTAAA (7) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina TTTTTGTAAA (7) 3.6 0.0036 E18.5 retina GGGGGAGGGG (18) 1.8 0.0018 E18.5 retina TGTACACACA (8) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCAGCCCCCC 7.9 0.0079 P0.5 retina CAGTCCTTTG (4) 2 0.002 P0.5 retina TTTTTGTAAA (7) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TTTTTGTAAA (7) 7 0.007 P2.5 retina GGGGGAGGGG (18) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina TTTTTGTAAA (7) 9.9 0.0099 P4.5 retina GCAGCCCCCC 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TGTACACACA (8) 3.3 0.0033 P6.5 retina CATACATAGA 1.7 0.0017 P6.5 retina GGGGGAGGGG (18) 1.7 0.0017 P6.5 retina TCTCCTTTCT (8) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TTTTTGTAAA (7) 9.3 0.0093 P10.5 crx- retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx- retina TCTCCTTTCT (8) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CAGCGCTTGG 3.8 0.0038 P10.5 crx+ retina TTTTTGTAAA (7) 3.8 0.0038 P10.5 crx+ retina CATACATAGA 1.9 0.0019 P10.5 crx+ retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx+ retina TGTACACACA (8) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CAGCGCTTGG 1.9 0.0019 Adult retinal GGGGGAGGGG (18) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CAGTCCTTTG (4) 3.8 0.0038 ONL TTTTTGTAAA (7) 3.8 0.0038 ONL TCTCCTTTCT (8) 1.9 0.0019 ONL TGTACACACA (8) 1.9 0.0019