Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260737	Spag9	sperm associated antigen 9	11		70834
Mm.260737	3110018C07Rik	RIKEN cDNA 3110018C07 gene	11		73163
Mm.260737	Rpl27	ribosomal protein L27	11		19942
Gene Ontology	cytosolic ribosome (sensu Eukarya) | ribonucleoprotein complex | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPL27[ribosomal protein L27]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 162 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GGAGGCTTTT (5) 4.9 0.0049 P8 Cb GC GGTTGGGTTC (5) 4.9 0.0049 P8 Cb GC GAGAGAAACA (7) 3.3 0.0033 P8 Cb GC ATTCAACACA (9) 1.6 0.0016 P8 Cb GC CACACACATA (15) 1.6 0.0016 P8 Cb GC CACATACATA (7) 1.6 0.0016 P8 Cb GC CTTGTCATCA (4) 1.6 0.0016 P8 Cb GC GCCCAGAGCT (4) 1.6 0.0016 P8 Cb GC GTCCTAAAAA (7) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GGTTGGGTTC (5) 9.2 0.0092 Cb medulloblastoma CTTGTCATCA (4) 6.9 0.0069 Cb medulloblastoma GAGAGAAACC (8) 4.6 0.0046 Cb medulloblastoma TGTGAAAAAA (7) 4.6 0.0046 Cb medulloblastoma CACACACATA (15) 2.3 0.0023 Cb medulloblastoma CACATACATA (7) 2.3 0.0023 Cb medulloblastoma GATTGGAGAA (6) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GGTTGGGTTC (5) 9.1 0.0091 P8 GC+1d culture AAATATATAT (9) 4.6 0.0046 P8 GC+1d culture GGAGGCTTTT (5) 4.6 0.0046 P8 GC+1d culture CTTGTCATCA (4) 3.4 0.0034 P8 GC+1d culture ATTCAACACA (9) 1.1 0.0011 P8 GC+1d culture GAGCTGGAGG (10) 1.1 0.0011 P8 GC+1d culture TGTGAAAAAA (7) 1.1 0.0011 P8 GC+1d culture TTGGCAAAGA (6) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GGAGGCTTTT (5) 8.2 0.0082 P8 GC+SHH+1d culture GGTTGGGTTC (5) 4.7 0.0047 P8 GC+SHH+1d culture AAATATATAT (9) 3.5 0.0035 P8 GC+SHH+1d culture TGTGAAAAAA (7) 3.5 0.0035 P8 GC+SHH+1d culture ATTCAACACA (9) 1.2 0.0012 P8 GC+SHH+1d culture CACATACATA (7) 1.2 0.0012 P8 GC+SHH+1d culture CTTGTCATCA (4) 1.2 0.0012 P8 GC+SHH+1d culture GAGAGAAACA (7) 1.2 0.0012 3T3 fibroblasts GGAGGCTTTT (5) 31.5 0.0315 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GAGCTGGAGG (10) 7 0.007 3T3 fibroblasts GGTTGGGTTC (5) 7 0.007 3T3 fibroblasts CTTGTCATCA (4) 3.5 0.0035 3T3 fibroblasts GAGAGAAACC (8) 3.5 0.0035 3T3 fibroblasts TGTGAAAAAA (7) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGAGGCTTTT (5) 9.9 0.0099 E15 cortex GAGAGAAACC (8) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AAATATATAT (9) 4.5 0.0045 P1 cortex CTCACACACA (7) 4.5 0.0045 P1 cortex GGTTGGGTTC (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGTTGGGTTC (5) 19.9 0.0199 Hypothalamus TTGGCAAAGA (6) 3.6 0.0036 Hypothalamus CACACACATA (15) 1.8 0.0018 Hypothalamus GAGAGAAACC (8) 1.8 0.0018 Hypothalamus GAGCTGGAGG (10) 1.8 0.0018 Hypothalamus GATTGGAGAA (6) 1.8 0.0018 Hypothalamus GCCCAGAGCT (4) 1.8 0.0018 Hypothalamus GGAGGCTTTT (5) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GGTTGGGTTC (5) 15 0.015 E12.5 retina CTTGTCATCA (4) 7.5 0.0075 E12.5 retina AAATATATAT (9) 1.9 0.0019 E12.5 retina ATTCAACACA (9) 1.9 0.0019 E12.5 retina CACACACATA (15) 1.9 0.0019 E12.5 retina CACATACATA (7) 1.9 0.0019 E12.5 retina CTCACACACA (7) 1.9 0.0019 E12.5 retina GAGCTGGAGG (10) 1.9 0.0019 E12.5 retina GATTGGAGAA (6) 1.9 0.0019 E12.5 retina GGAGGCTTTT (5) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AAATATATAT (9) 5.5 0.0055 E14.5 retina CTCACACACA (7) 5.5 0.0055 E14.5 retina GGTTGGGTTC (5) 5.5 0.0055 E14.5 retina GCCCAGAGCT (4) 3.6 0.0036 E14.5 retina CACATACATA (7) 1.8 0.0018 E14.5 retina CTTGTCATCA (4) 1.8 0.0018 E14.5 retina GATTGGAGAA (6) 1.8 0.0018 E14.5 retina GGAGGCTTTT (5) 1.8 0.0018 E14.5 retina TTGGCAAAGA (6) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GGTTGGGTTC (5) 9.1 0.0091 E16.5 retina CTTGTCATCA (4) 7.2 0.0072 E16.5 retina ATTCAACACA (9) 1.8 0.0018 E16.5 retina GAGCTGGAGG (10) 1.8 0.0018 E16.5 retina GGAGGCTTTT (5) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GGAGGCTTTT (5) 5.5 0.0055 E18.5 retina AAATATATAT (9) 3.6 0.0036 E18.5 retina CACACACATA (15) 1.8 0.0018 E18.5 retina CTCACACACA (7) 1.8 0.0018 E18.5 retina GGTTGGGTTC (5) 1.8 0.0018 E18.5 retina TGTGAAAAAA (7) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GGAGGCTTTT (5) 21.6 0.0216 P0.5 retina GGTTGGGTTC (5) 11.8 0.0118 P0.5 retina CTTGTCATCA (4) 7.9 0.0079 P0.5 retina ATTCAACACA (9) 2 0.002 P0.5 retina CACATACATA (7) 2 0.002 P0.5 retina CTCACACACA (7) 2 0.002 P0.5 retina TTGGCAAAGA (6) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GGTTGGGTTC (5) 7 0.007 P2.5 retina GGAGGCTTTT (5) 5.3 0.0053 P2.5 retina ATTCAACACA (9) 3.5 0.0035 P2.5 retina CACATACATA (7) 1.8 0.0018 P2.5 retina GAGAGAAACA (7) 1.8 0.0018 P2.5 retina GATTGGAGAA (6) 1.8 0.0018 P2.5 retina GTCCTAAAAA (7) 1.8 0.0018 P2.5 retina TAGATCCAAA (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGTGAAAAAA (7) 7.9 0.0079 P4.5 retina AAATATATAT (9) 4 0.004 P4.5 retina ATTCAACACA (9) 4 0.004 P4.5 retina GATTGGAGAA (6) 4 0.004 P4.5 retina CTCACACACA (7) 2 0.002 P4.5 retina CTTGTCATCA (4) 2 0.002 P4.5 retina GAGCTGGAGG (10) 2 0.002 P4.5 retina GGAGGCTTTT (5) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CTTGTCATCA (4) 6.7 0.0067 P6.5 retina GGTTGGGTTC (5) 6.7 0.0067 P6.5 retina GGAGGCTTTT (5) 5 0.005 P6.5 retina GATTGGAGAA (6) 3.3 0.0033 P6.5 retina TGTGAAAAAA (7) 3.3 0.0033 P6.5 retina CACACACATA (15) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GGTTGGGTTC (5) 9.3 0.0093 P10.5 crx- retina AAATATATAT (9) 5.6 0.0056 P10.5 crx- retina CTTGTCATCA (4) 5.6 0.0056 P10.5 crx- retina GAGCTGGAGG (10) 5.6 0.0056 P10.5 crx- retina GGAGGCTTTT (5) 3.7 0.0037 P10.5 crx- retina GTCCTAAAAA (7) 3.7 0.0037 P10.5 crx- retina TTGGCAAAGA (6) 3.7 0.0037 P10.5 crx- retina CTCACACACA (7) 1.9 0.0019 P10.5 crx- retina TGTGAAAAAA (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GGTTGGGTTC (5) 9.6 0.0096 P10.5 crx+ retina GGAGGCTTTT (5) 3.8 0.0038 P10.5 crx+ retina AAATATATAT (9) 1.9 0.0019 P10.5 crx+ retina ATTCAACACA (9) 1.9 0.0019 P10.5 crx+ retina CACATACATA (7) 1.9 0.0019 P10.5 crx+ retina CTCACACACA (7) 1.9 0.0019 P10.5 crx+ retina GATTGGAGAA (6) 1.9 0.0019 P10.5 crx+ retina GTCCTAAAAA (7) 1.9 0.0019 P10.5 crx+ retina TGTGAAAAAA (7) 1.9 0.0019 P10.5 crx+ retina TTGGCAAAGA (6) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GGAGGCTTTT (5) 20.4 0.0204 Adult retinal GGTTGGGTTC (5) 13 0.013 Adult retinal CTCACACACA (7) 5.6 0.0056 Adult retinal TGTGAAAAAA (7) 5.6 0.0056 Adult retinal CACACACATA (15) 3.7 0.0037 Adult retinal GATTGGAGAA (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GGAGGCTTTT (5) 7.7 0.0077 ONL GGTTGGGTTC (5) 7.7 0.0077 ONL CACACACATA (15) 5.7 0.0057 ONL CTCACACACA (7) 3.8 0.0038 ONL GTCCTAAAAA (7) 3.8 0.0038 ONL GAGAGAAACA (7) 1.9 0.0019 ONL GATTGGAGAA (6) 1.9 0.0019