Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.2608
Bgn
biglycan
X
X 29.3 cM
12111
Gene Ontology
extracellular matrix
|
extracellular space
Human Homolog
BGN[biglycan]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 59 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGTGTGTGTG (
115
)
27.7
0.0277
P8 Cb GC
GTGTATCTCT
(
4
)
1.6
0.0016
P8 Cb GC
TCTGACTTCC
(
3
)
1.6
0.0016
Cb medulloblastoma
TGTGTGTGTG (
115
)
30.1
0.0301
Cb medulloblastoma
AAAAAAAAAT (
25
)
4.6
0.0046
Cb medulloblastoma
AAGAAAAAGA
(
6
)
2.3
0.0023
P8 GC+1d culture
TGTGTGTGTG (
115
)
27.4
0.0274
P8 GC+1d culture
AAAAAAAAAT (
25
)
3.4
0.0034
P8 GC+1d culture
GTGTATCTCT
(
4
)
1.1
0.0011
P8 GC+1d culture
TCAATCCCAG (
4
)
1.1
0.0011
P8 GC+1d culture
TCTGACTTCC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TGTGTGTGTG (
115
)
28.1
0.0281
P8 GC+SHH+1d culture
AAAAAAAAAT (
25
)
5.9
0.0059
P8 GC+SHH+1d culture
AAGAAAAAGA
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGTATCTCT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TCAATCCCAG (
4
)
1.2
0.0012
3T3 fibroblasts
TCTGACTTCC
(
3
)
66.6
0.0666
3T3 fibroblasts
TGTGTGTGTG (
115
)
28
0.028
3T3 fibroblasts
GTGGCCTTGG
(
4
)
10.5
0.0105
3T3 fibroblasts
TCAATCCCAG (
4
)
3.5
0.0035
P1 cortex
TGTGTGTGTG (
115
)
18.2
0.0182
P1 cortex
AAAAAAAAAT (
25
)
9.1
0.0091
P1 cortex
GCCTGGCCCT
(
5
)
4.5
0.0045
Hypothalamus
TGTGTGTGTG (
115
)
25.4
0.0254
Hypothalamus
TCTGACTTCC
(
3
)
1.8
0.0018
E12.5 retina
TGTGTGTGTG (
115
)
43.2
0.0432
E14.5 retina
TGTGTGTGTG (
115
)
54.7
0.0547
E14.5 retina
AAAAAAAAAT (
25
)
5.5
0.0055
E16.5 retina
TGTGTGTGTG (
115
)
39.8
0.0398
E16.5 retina
AAAAAAAAAT (
25
)
1.8
0.0018
E18.5 retina
TGTGTGTGTG (
115
)
47.3
0.0473
E18.5 retina
AAAAAAAAAT (
25
)
7.3
0.0073
E18.5 retina
GCCTGGCCCT
(
5
)
1.8
0.0018
E18.5 retina
GTCTCTCTCT
1.8
0.0018
P0.5 retina
TGTGTGTGTG (
115
)
21.6
0.0216
P0.5 retina
AAAAAAAAAT (
25
)
3.9
0.0039
P0.5 retina
GTCTCTCTCT
2
0.002
P2.5 retina
TGTGTGTGTG (
115
)
35.2
0.0352
P2.5 retina
AAAAAAAAAT (
25
)
3.5
0.0035
P2.5 retina
AAGAAAAAGA
(
6
)
1.8
0.0018
P4.5 retina
TGTGTGTGTG (
115
)
47.6
0.0476
P4.5 retina
AAAAAAAAAT (
25
)
4
0.004
P4.5 retina
GCCTGGCCCT
(
5
)
2
0.002
P6.5 retina
TGTGTGTGTG (
115
)
41.7
0.0417
P6.5 retina
GCCTGGCCCT
(
5
)
1.7
0.0017
P10.5 crx- retina
TGTGTGTGTG (
115
)
59.4
0.0594
P10.5 crx- retina
GCCTGGCCCT
(
5
)
5.6
0.0056
P10.5 crx- retina
AAAAAAAAAT (
25
)
3.7
0.0037
P10.5 crx- retina
TCTGACTTCC
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGTG (
115
)
44.2
0.0442
P10.5 crx+ retina
GCCTGGCCCT
(
5
)
3.8
0.0038
P10.5 crx+ retina
TCAATCCCAG (
4
)
1.9
0.0019
Adult retinal
TGTGTGTGTG (
115
)
53.7
0.0537
Adult retinal
AAAAAAAAAT (
25
)
1.9
0.0019
Adult retinal
TCTGACTTCC
(
3
)
1.9
0.0019
ONL
TGTGTGTGTG (
115
)
23
0.023
ONL
AAAAAAAAAT (
25
)
1.9
0.0019
ONL
GCCTGGCCCT
(
5
)
1.9
0.0019
ONL
GTCTCTCTCT
1.9
0.0019
