Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.261681
2010107H07Rik
RIKEN cDNA 2010107H07 gene
14
66487
Mm.261681
B930019K04Rik
RIKEN cDNA B930019K04 gene
14
320094
Mm.261681
2510015F01Rik
RIKEN cDNA 2510015F01 gene
14
70021
Human Homolog
FLJ12442[hypothetical protein FLJ12442]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 86 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCCCACATCC
(
5
)
42.4
0.0424
P8 Cb GC
GGAAACAGTG (
6
)
11.4
0.0114
P8 Cb GC
GACCAGTGGA (
6
)
9.8
0.0098
P8 Cb GC
GGCCCCCTCC (
7
)
1.6
0.0016
Cb medulloblastoma
GGAAACAGTG (
6
)
23.1
0.0231
Cb medulloblastoma
GACCAGTGGA (
6
)
20.8
0.0208
Cb medulloblastoma
GCCCACATCC
(
5
)
4.6
0.0046
Cb medulloblastoma
GGCCCCCTCC (
7
)
4.6
0.0046
Cb medulloblastoma
GGAAACAGCT (
7
)
2.3
0.0023
P8 GC+1d culture
GCCCACATCC
(
5
)
87.9
0.0879
P8 GC+1d culture
GGAAACAGTG (
6
)
43.4
0.0434
P8 GC+1d culture
GGCCCCCTCC (
7
)
6.8
0.0068
P8 GC+1d culture
GACCAGTGGA (
6
)
4.6
0.0046
P8 GC+1d culture
GGAAACAGCT (
7
)
2.3
0.0023
P8 GC+1d culture
CAGCCAGTGC (
6
)
1.1
0.0011
P8 GC+1d culture
GCCTCACTCA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GCCCACATCC
(
5
)
56.2
0.0562
P8 GC+SHH+1d culture
GGAAACAGTG (
6
)
28.1
0.0281
P8 GC+SHH+1d culture
GGCCCCCTCC (
7
)
7
0.007
P8 GC+SHH+1d culture
GACCAGTGGA (
6
)
3.5
0.0035
P8 GC+SHH+1d culture
CAGCCAGTGC (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
CCCCTAGCAC (
5
)
1.2
0.0012
3T3 fibroblasts
GACCAGTGGA (
6
)
10.5
0.0105
3T3 fibroblasts
CCCCTAGCAC (
5
)
7
0.007
3T3 fibroblasts
GCCCACATCC
(
5
)
7
0.007
E15 cortex
GGAAACAGTG (
6
)
19.8
0.0198
E15 cortex
GCCCACATCC
(
5
)
14.8
0.0148
E15 cortex
GACCAGTGGA (
6
)
9.9
0.0099
E15 cortex
GGCCCCCTCC (
7
)
9.9
0.0099
P1 cortex
GGAAACAGTG (
6
)
18.2
0.0182
P1 cortex
GGAAACAGCT (
7
)
4.5
0.0045
Hypothalamus
GACCAGTGGA (
6
)
7.2
0.0072
E12.5 retina
GCCCACATCC
(
5
)
35.7
0.0357
E12.5 retina
GACCAGTGGA (
6
)
9.4
0.0094
E12.5 retina
AGATCCGCCA
(
3
)
1.9
0.0019
E12.5 retina
CAGCCAGTGC (
6
)
1.9
0.0019
E12.5 retina
CCCCTAGCAC (
5
)
1.9
0.0019
E14.5 retina
GCCCACATCC
(
5
)
56.5
0.0565
E14.5 retina
GACCAGTGGA (
6
)
3.6
0.0036
E14.5 retina
GGAAACAGCT (
7
)
1.8
0.0018
E14.5 retina
GGCCCCCTCC (
7
)
1.8
0.0018
E14.5 retina
TAGAGGTCGG
(
3
)
1.8
0.0018
E16.5 retina
GCCCACATCC
(
5
)
74.3
0.0743
E16.5 retina
TAGAGGTCGG
(
3
)
3.6
0.0036
E16.5 retina
AGATCCGCCA
(
3
)
1.8
0.0018
E16.5 retina
CAGCCAGTGC (
6
)
1.8
0.0018
E16.5 retina
GCCTCACTCA
(
3
)
1.8
0.0018
E18.5 retina
GCCCACATCC
(
5
)
23.6
0.0236
E18.5 retina
GACCAGTGGA (
6
)
1.8
0.0018
E18.5 retina
GGAAACAGTG (
6
)
1.8
0.0018
P0.5 retina
GCCCACATCC
(
5
)
39.3
0.0393
P0.5 retina
GACCAGTGGA (
6
)
7.9
0.0079
P0.5 retina
AGATCCGCCA
(
3
)
3.9
0.0039
P0.5 retina
GGAAACAGTG (
6
)
3.9
0.0039
P0.5 retina
GGCCCCCTCC (
7
)
3.9
0.0039
P0.5 retina
GGAAACAGCT (
7
)
2
0.002
P2.5 retina
GCCCACATCC
(
5
)
28.2
0.0282
P2.5 retina
GGAAACAGTG (
6
)
3.5
0.0035
P2.5 retina
GGCCCCCTCC (
7
)
3.5
0.0035
P2.5 retina
GACCAGTGGA (
6
)
1.8
0.0018
P4.5 retina
GCCCACATCC
(
5
)
31.7
0.0317
P4.5 retina
GACCAGTGGA (
6
)
4
0.004
P4.5 retina
GGAAACAGTG (
6
)
4
0.004
P4.5 retina
GGCCCCCTCC (
7
)
4
0.004
P4.5 retina
GCCTCACTCA
(
3
)
2
0.002
P6.5 retina
GCCCACATCC
(
5
)
10
0.01
P6.5 retina
GACCAGTGGA (
6
)
5
0.005
P6.5 retina
GGAAACAGTG (
6
)
5
0.005
P6.5 retina
CAGCCAGTGC (
6
)
1.7
0.0017
P10.5 crx- retina
GACCAGTGGA (
6
)
9.3
0.0093
P10.5 crx- retina
GCCCACATCC
(
5
)
7.4
0.0074
P10.5 crx- retina
GGCCCCCTCC (
7
)
7.4
0.0074
P10.5 crx- retina
CCCCTAGCAC (
5
)
1.9
0.0019
P10.5 crx- retina
GGAAACAGTG (
6
)
1.9
0.0019
P10.5 crx+ retina
GACCAGTGGA (
6
)
13.5
0.0135
P10.5 crx+ retina
GCCCACATCC
(
5
)
11.5
0.0115
P10.5 crx+ retina
GGAAACAGTG (
6
)
9.6
0.0096
P10.5 crx+ retina
CAGCCAGTGC (
6
)
1.9
0.0019
P10.5 crx+ retina
GGCCCCCTCC (
7
)
1.9
0.0019
Adult retinal
GGCCCCCTCC (
7
)
7.4
0.0074
Adult retinal
GACCAGTGGA (
6
)
5.6
0.0056
Adult retinal
GGAAACAGTG (
6
)
3.7
0.0037
Adult retinal
GCCCACATCC
(
5
)
1.9
0.0019
ONL
GGAAACAGTG (
6
)
7.7
0.0077
ONL
GACCAGTGGA (
6
)
5.7
0.0057
ONL
GCCCACATCC
(
5
)
1.9
0.0019
