Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261786	Arcn1	archain 1	9		213827
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	ARCN1[archain 1] | ARCN1[archain 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TAGTAAAGTA 3.3 0.0033 P8 Cb GC ATACTGTAAT 1.6 0.0016 P8 Cb GC GGAACAGTGA (3) 1.6 0.0016 P8 Cb GC GGTGCAGGGA (5) 1.6 0.0016 P8 Cb GC TGAAAAGGAA (3) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GGAACAGTGA (3) 4.6 0.0046 Cb medulloblastoma GGTGCAGGGA (5) 4.6 0.0046 Cb medulloblastoma TAGTAAAGTA 4.6 0.0046 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TAGTAAAGTA 4.6 0.0046 P8 GC+1d culture GGTGCAGGGA (5) 2.3 0.0023 P8 GC+1d culture TGAAAAGGAA (3) 2.3 0.0023 P8 GC+1d culture ACAGTCGGAG 1.1 0.0011 P8 GC+1d culture ATACTGTAAT 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TGAAAAGGAA (3) 3.5 0.0035 P8 GC+SHH+1d culture GGTGCAGGGA (5) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TAGTAAAGTA 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GGTGCAGGGA (5) 5.6 0.0056 E12.5 retina ATACTGTAAT 3.8 0.0038 E12.5 retina TAGTAAAGTA 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GGTGCAGGGA (5) 7.3 0.0073 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GGTGCAGGGA (5) 3.6 0.0036 E18.5 retina TAGTAAAGTA 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GGTGCAGGGA (5) 3.9 0.0039 P0.5 retina TAGTAAAGTA 3.9 0.0039 P0.5 retina TGAAAAGGAA (3) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TAGTAAAGTA 3.5 0.0035 P2.5 retina ATACTGTAAT 1.8 0.0018 P2.5 retina GGTGCAGGGA (5) 1.8 0.0018 P2.5 retina TGAAAAGGAA (3) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina ATACTGTAAT 2 0.002 P4.5 retina GGTGCAGGGA (5) 2 0.002 P4.5 retina TGAAAAGGAA (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GGTGCAGGGA (5) 8.3 0.0083 P6.5 retina TAGTAAAGTA 3.3 0.0033 P6.5 retina TGAAAAGGAA (3) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TAGTAAAGTA 7.4 0.0074 P10.5 crx- retina TGAAAAGGAA (3) 3.7 0.0037 P10.5 crx- retina ATACTGTAAT 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina ATACTGTAAT 3.8 0.0038 P10.5 crx+ retina TAGTAAAGTA 1.9 0.0019 P10.5 crx+ retina TGAAAAGGAA (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal ATACTGTAAT 1.9 0.0019 Adult retinal TAGTAAAGTA 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL ACAGTCGGAG 3.8 0.0038 ONL TAGTAAAGTA 3.8 0.0038 ONL ATACTGTAAT 1.9 0.0019 ONL TGAAAAGGAA (3) 1.9 0.0019