Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261906	Grcc9	gene rich cluster, C9 gene	6	6 60.2 cM	14794
Gene Ontology	intracellular signaling cascade
Human Homolog	GRCC9[likely ortholog of mouse gene rich cluster, C9 gene]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAGGGAAAT (2) 26.1 0.0261 P8 Cb GC GCAGCCTGGG (3) 1.6 0.0016 Cb medulloblastoma TAAGGGAAAT (2) 101.7 0.1017 Cb medulloblastoma AGTTTCCAGC (2) 4.6 0.0046 Cb medulloblastoma GCAGCCTGGG (3) 2.3 0.0023 Cb medulloblastoma TAAGGGGAAT (2) 2.3 0.0023 Cb medulloblastoma TATACCGAAT 2.3 0.0023 P8 GC+1d culture TAAGGGAAAT (2) 59.4 0.0594 P8 GC+1d culture GCTCTGGGGG (5) 2.3 0.0023 P8 GC+1d culture TAAGGGGAAA (2) 2.3 0.0023 P8 GC+1d culture GAGGAGGGGA (12) 1.1 0.0011 P8 GC+SHH+1d culture TAAGGGAAAT (2) 48 0.048 P8 GC+SHH+1d culture GAGGAGGGGG (7) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCCTGGG (3) 1.2 0.0012 P8 GC+SHH+1d culture TAAGGGGAAT (2) 1.2 0.0012 3T3 fibroblasts GCTCTGGGGG (5) 3.5 0.0035 3T3 fibroblasts GTGGAGGCAG (4) 3.5 0.0035 E15 cortex TAAGGGAAAT (2) 4.9 0.0049 E15 cortex TAAGGGGAAA (2) 4.9 0.0049 P1 cortex TAAGGGAAAT (2) 18.2 0.0182 Hypothalamus TAAGGGAAAT (2) 74.3 0.0743 Hypothalamus GCAGCCTGGG (3) 7.2 0.0072 Hypothalamus TATACCGAAT 3.6 0.0036 Hypothalamus AGACCCTAAG (4) 1.8 0.0018 Hypothalamus GAGGAGGGGG (7) 1.8 0.0018 Hypothalamus TCAGGGAACA (4) 1.8 0.0018 E12.5 retina TAAGGGAAAT (2) 71.3 0.0713 E12.5 retina GAGGAGGGGA (12) 1.9 0.0019 E14.5 retina TAAGGGAAAT (2) 69.2 0.0692 E14.5 retina TATACCGAAT 3.6 0.0036 E14.5 retina GAGGAGGGGG (7) 1.8 0.0018 E14.5 retina TAAGGGGAAT (2) 1.8 0.0018 E16.5 retina TAAGGGAAAT (2) 90.6 0.0906 E16.5 retina TATACCGAAT 5.4 0.0054 E16.5 retina AGACCCTAAG (4) 1.8 0.0018 E16.5 retina GCAGCCTGGG (3) 1.8 0.0018 E16.5 retina GTTGGAGCAC (2) 1.8 0.0018 E18.5 retina TAAGGGAAAT (2) 231 0.231 E18.5 retina GCAGCCTGGG (3) 3.6 0.0036 E18.5 retina GTTGGAGCAC (2) 1.8 0.0018 E18.5 retina TAAGGGGAAT (2) 1.8 0.0018 P0.5 retina TAAGGGAAAT (2) 25.5 0.0255 P0.5 retina AGTTTCCAGC (2) 2 0.002 P0.5 retina TAAGGGGAAT (2) 2 0.002 P2.5 retina TAAGGGAAAT (2) 89.7 0.0897 P2.5 retina GAGGAGGGGA (12) 1.8 0.0018 P2.5 retina GCAGCCTGGG (3) 1.8 0.0018 P2.5 retina TAAGGGAAAA (2) 1.8 0.0018 P4.5 retina TAAGGGAAAT (2) 136.7 0.1367 P4.5 retina GCAGCCTGGG (3) 5.9 0.0059 P4.5 retina TAAGGGGAAT (2) 4 0.004 P4.5 retina TAAGGGGAAA (2) 2 0.002 P6.5 retina TAAGGGAAAT (2) 66.7 0.0667 P6.5 retina TATACCGAAT 3.3 0.0033 P6.5 retina TCAGGGAACA (4) 3.3 0.0033 P6.5 retina AGACCCTAAG (4) 1.7 0.0017 P10.5 crx- retina TAAGGGAAAT (2) 63.2 0.0632 P10.5 crx- retina AGTTTCCAGC (2) 3.7 0.0037 P10.5 crx- retina GTTGGAGCAC (2) 3.7 0.0037 P10.5 crx- retina TATACCGAAT 3.7 0.0037 P10.5 crx- retina AGACCCTAAG (4) 1.9 0.0019 P10.5 crx+ retina TAAGGGAAAT (2) 96.1 0.0961 P10.5 crx+ retina GCAGCCTGGG (3) 3.8 0.0038 P10.5 crx+ retina GTGGAGGCAG (4) 1.9 0.0019 P10.5 crx+ retina TAAGGGAAAA (2) 1.9 0.0019 P10.5 crx+ retina TAAGGGGAAA (2) 1.9 0.0019 P10.5 crx+ retina TAAGGGGAAT (2) 1.9 0.0019 Adult retinal TAAGGGAAAT (2) 31.5 0.0315 Adult retinal GTTGGAGCAC (2) 3.7 0.0037 Adult retinal AGTTTCCAGC (2) 1.9 0.0019 Adult retinal GTGGAGGCAG (4) 1.9 0.0019 Adult retinal TAAGGGAAAA (2) 1.9 0.0019 ONL TAAGGGAAAT (2) 24.9 0.0249 ONL GAGGAGGGGG (7) 7.7 0.0077 ONL TAAGGGAAAA (2) 1.9 0.0019